Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00250
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)              101   4e-22
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)                 30   0.94 
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         27   6.6  
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)                27   8.8  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score =  101 bits (241), Expect = 4e-22
 Identities = 48/76 (63%), Positives = 57/76 (75%)
 Frame = +3

Query: 24  MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEADKALDKRQAVLCVLA 203
           M+D E +  T    +G  MD+N ALQEVLKTALIH GL  GLHEA K+LDKR+A LC+L+
Sbjct: 1   MSDAEGDDTTQQPAAGGAMDINTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILS 60

Query: 204 ENCDEAAYKKLVQALC 251
            NCDEA Y KLV+ALC
Sbjct: 61  NNCDEAMYVKLVEALC 76



 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 34/42 (80%), Positives = 41/42 (97%)
 Frame = +2

Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 379
           +H IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 78  EHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119


>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
          Length = 330

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 99  QEVLKTALIHGGLVHGLHEADKALDKRQAVLCVLAENCDEAAYKKLV 239
           + +L+    +G ++  L  AD  +  R   LCV A  CDE  ++ LV
Sbjct: 70  KSLLQQPCPNGRVILSLAVADLCIGLRLEALCVFAARCDEMTWRVLV 116


>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 376 DDNTGAADNFPCLAILVNLAETSPFSKLF 290
           DD    +D +PC+ I+VN++ T   +K F
Sbjct: 10  DDGLTCSDVYPCVEIMVNISSTGSETKKF 38


>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 234 VSCMRLHHSSQPKHIVLLASCQELYRLREDRAQDHHGLK 118
           VSC +LH S+  KH   LA   E   L E+  +    LK
Sbjct: 358 VSCQKLHWSTHKKHCQRLAKEYEQELLMEEEIKRQEELK 396


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 400 SVGCAQGLPQVVELILRCNANPY 468
           S+ CA G   VVEL+L   ANPY
Sbjct: 83  SLACAGGHLAVVELLLAHGANPY 105


>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
          Length = 919

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
 Frame = +3

Query: 48   PTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEADKALDKRQAVLCVLAENCDEAAY 227
            P   ++ GN +D+ V   E+++   + GG   G  E D A ++  A+     + C +  Y
Sbjct: 656  PDCKMIEGNFVDIKVPRSEIMREKQLRGG---GQDE-DDAEEEETALFSCPVQGCVK-TY 710

Query: 228  KKLVQALCNNIRF-----HWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISAR 392
            ++   +L N+++F        RL+T    + G      +  + Q  +   PV  S+   +
Sbjct: 711  QRF-SSLDNHLQFGTCKLKLERLSTLDRAKLGYHDKLQSGASAQATIQ-VPVAPSRQRQQ 768

Query: 393  KL-QRWMCSRTTSSRR 437
            +L Q W    T  S R
Sbjct: 769  ELSQGWALKTTRKSSR 784


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,982
Number of Sequences: 59808
Number of extensions: 313048
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)