Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00249
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2PQU4 Cluster: Putative paralytic peptide-binding prot...   237   2e-61
UniRef50_Q76IB6 Cluster: Growth blocking peptide binding protein...    90   6e-17
UniRef50_Q3TYK0 Cluster: Visual cortex cDNA, RIKEN full-length e...    38   0.35 
UniRef50_Q02953 Cluster: Heat shock factor protein; n=2; Schizos...    35   2.4  
UniRef50_P47179 Cluster: Cell wall protein DAN4 precursor; n=36;...    34   4.3  
UniRef50_Q0SKI2 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  
UniRef50_Q9ZTZ5 Cluster: rRNA N-glycosidase; n=2; Amaranthus vir...    33   7.5  
UniRef50_Q9UVF6 Cluster: pH-response regulator protein palH/RIM2...    33   7.5  
UniRef50_UPI00015B8E8E Cluster: UPI00015B8E8E related cluster; n...    33   9.9  
UniRef50_Q0BZP0 Cluster: GGDEF/GAF domain protein; n=1; Hyphomon...    33   9.9  

>UniRef50_Q2PQU4 Cluster: Putative paralytic peptide-binding
           protein; n=1; Bombyx mori|Rep: Putative paralytic
           peptide-binding protein - Bombyx mori (Silk moth)
          Length = 436

 Score =  237 bits (581), Expect = 2e-61
 Identities = 122/165 (73%), Positives = 131/165 (79%), Gaps = 1/165 (0%)
 Frame = +2

Query: 254 HVNEQFALVSKGHNEGKQIPNRIPXXXXXXXXXXXYIRDDSVKTVTISTGPITKRCAADV 433
           +VNEQFALVSKGH++GKQIPNRIP           YIRD  VKTVTISTGPI+KRCAADV
Sbjct: 82  NVNEQFALVSKGHSKGKQIPNRIPVVSVDDSDTSSYIRDGGVKTVTISTGPISKRCAADV 141

Query: 434 ARIVNASEGSSLPTDILKILTTFK-IRA*LGKNGLYYGAGYELPADLKTQTAFSTKMVFA 610
           ARIVNASEG  +     +     + +   LGK GLYYGAGYELPADLKTQT FSTKMVFA
Sbjct: 142 ARIVNASEGLVVAYGYSENSDDIQNLERELGKKGLYYGAGYELPADLKTQTEFSTKMVFA 201

Query: 611 DATSINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLV 745
           DA SIN+HLYNLVTGGDYINAVKTVRSL DNQGS VCRDVVSRLV
Sbjct: 202 DARSINDHLYNLVTGGDYINAVKTVRSLDDNQGSGVCRDVVSRLV 246



 Score =  136 bits (329), Expect = 5e-31
 Identities = 62/81 (76%), Positives = 64/81 (79%)
 Frame = +3

Query: 12  MLTSSSPSQVKTPXXXXXXXXXXPDYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHV 191
           M TS S SQVKTP          PDY TNEDLLY YSPIPYFGMYHLVKIPI RGLVHHV
Sbjct: 1   MTTSFSHSQVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHV 60

Query: 192 DYWGEGKVTNLDKIRGFPRSY 254
           DYWGEGKVTNLD++RGF RSY
Sbjct: 61  DYWGEGKVTNLDRVRGFRRSY 81


>UniRef50_Q76IB6 Cluster: Growth blocking peptide binding protein;
           n=1; Mythimna separata|Rep: Growth blocking peptide
           binding protein - Pseudaletia separata (Oriental
           armyworm) (Mythimna separata)
          Length = 430

 Score = 89.8 bits (213), Expect = 6e-17
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
 Frame = +2

Query: 254 HVNEQFALVSKGHNEGKQIPNRIPXXXXXXXXXXXYIRDDSVKTVTIS-TGPITKRCAAD 430
           +VN Q+ LVS G ++ ++IPNRIP           YI+D+SV TVT++    IT  CA D
Sbjct: 72  NVNHQYQLVSSGPDKDRKIPNRIPVRSDEDCDTSSYIKDNSVLTVTVAEASRITSSCAKD 131

Query: 431 VARIVNASEGSSLPTDIL-KILTTFKIRA*LGKNGLYYGAGYELPADLKTQTAFSTKMVF 607
           +ARI+N+  G  +   +        ++   L K GL       LP +L+  T +++ + F
Sbjct: 132 IARIINSDHGKVIVYGVQGNSQEISELAVELRKKGLTPSPNAALPRELQGLTYYNSHVAF 191

Query: 608 ADATSINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLV 745
            D  +    +YN V  GDY  AV   +S      S+    +V+RL+
Sbjct: 192 LDNHNFEEEVYNSVINGDYDAAVNMAQSYGVASNSEFTNRIVTRLM 237



 Score = 66.9 bits (156), Expect = 5e-10
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +3

Query: 81  PDYDTNEDLLYAYSPIPYFGMYHLVKIPID-RGLVHHVDYWGEGKVTNLDKIRGFPRSYM 257
           P+++TN +  + YS  PY G Y+L KIPI    L+ HVDYWGEGKV   + +RGF   Y 
Sbjct: 13  PNFNTNINKQFPYSETPYQGDYYLEKIPISLNNLIQHVDYWGEGKVVTEEGVRGFSNCYN 72

Query: 258 *TNSLRSSVRATTRESKYPTGSP 326
             +  +       ++ K P   P
Sbjct: 73  VNHQYQLVSSGPDKDRKIPNRIP 95


>UniRef50_Q3TYK0 Cluster: Visual cortex cDNA, RIKEN full-length
           enriched library, clone:K230015D01 product:hypothetical
           Proline-rich region profile containing protein, full
           insert sequence; n=1; Mus musculus|Rep: Visual cortex
           cDNA, RIKEN full-length enriched library,
           clone:K230015D01 product:hypothetical Proline-rich
           region profile containing protein, full insert sequence
           - Mus musculus (Mouse)
          Length = 167

 Score = 37.5 bits (83), Expect = 0.35
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 122 PNTLLRYVPPREDPDRQRAGTPCR 193
           P++L R V PR  PDR+RAG PCR
Sbjct: 129 PDSLTREVEPRTPPDRERAGDPCR 152


>UniRef50_Q02953 Cluster: Heat shock factor protein; n=2;
           Schizosaccharomyces pombe|Rep: Heat shock factor protein
           - Schizosaccharomyces pombe (Fission yeast)
          Length = 609

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 27/84 (32%), Positives = 36/84 (42%)
 Frame = +3

Query: 300 ESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKDRRCLRI 479
           E+KYPT SP+   +  + P    TTA+    SA   SL        G     ++ R L  
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNGRALNY 308

Query: 480 F*KF*RHSKSERDLAKTAYTMEPG 551
              F   S S +D    +YT EPG
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPG 332


>UniRef50_P47179 Cluster: Cell wall protein DAN4 precursor; n=36;
           Saccharomyces cerevisiae|Rep: Cell wall protein DAN4
           precursor - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1161

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 261 TNSLRSSVRATTRESKYPT-GSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSP 437
           T S  S+   T+ +S  PT  S S   TT+T P TS T+ +    +    S +  + T+P
Sbjct: 232 TTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAP 291

Query: 438 GLST 449
             ST
Sbjct: 292 TTST 295


>UniRef50_Q0SKI2 Cluster: Putative uncharacterized protein; n=2;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 652

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 288 ATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSA 398
           A  + +  PT +PS   TT T P  +ETTA ++ PS+
Sbjct: 39  AAAQPTTTPTPTPSTTTTTPTSPTPTETTAERVTPSS 75


>UniRef50_Q9ZTZ5 Cluster: rRNA N-glycosidase; n=2; Amaranthus
           viridis|Rep: rRNA N-glycosidase - Amaranthus viridis
           (Slender amaranth)
          Length = 279

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +2

Query: 506 IRA*LGKNGLYYGAGYELPAD-LKTQTAFS-----TKMVFADATSINNHLYNLVTG 655
           I A   KN LYY  GY   AD  K    F       +++F D T+INN  Y+ +TG
Sbjct: 94  ITAAFNKNDLYY-MGYAHTADGAKKVRLFKGAPTDVRLIFPDVTNINNRYYSTITG 148


>UniRef50_Q9UVF6 Cluster: pH-response regulator protein palH/RIM21;
           n=1; Yarrowia lipolytica|Rep: pH-response regulator
           protein palH/RIM21 - Yarrowia lipolytica (Candida
           lipolytica)
          Length = 632

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 164 RDLHEVVHTEVGYWGVRIQQVLICVVVWL 78
           ++ +E+ H  +G W  RI QV+ CV+ WL
Sbjct: 181 QNAYELRHKIMGGWAFRILQVITCVITWL 209


>UniRef50_UPI00015B8E8E Cluster: UPI00015B8E8E related cluster; n=1;
           unknown|Rep: UPI00015B8E8E UniRef100 entry - unknown
          Length = 69

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 156 KIPIDRG--LVHHVDYWGEGKVTNLD 227
           +IP+  G  L  HV YWG+GK+T+LD
Sbjct: 14  EIPMTDGERLQGHVSYWGQGKITSLD 39


>UniRef50_Q0BZP0 Cluster: GGDEF/GAF domain protein; n=1; Hyphomonas
           neptunium ATCC 15444|Rep: GGDEF/GAF domain protein -
           Hyphomonas neptunium (strain ATCC 15444)
          Length = 369

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 104 PVVCVLPNTLLRYVPPREDPDRQRAGTPCRLLGRRKSD*P*QDKRLPSELHVNEQ 268
           P V   PN +     P  DPD +R GT C +  + +S  P Q + L S  H+  Q
Sbjct: 102 PAVMGAPNVVFFAGAPLSDPDGKRFGTLCLIGNQPRSPAPGQIELLKSMAHIVSQ 156


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,510,382
Number of Sequences: 1657284
Number of extensions: 14394987
Number of successful extensions: 39583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39536
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)