Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00249
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   6.0  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   6.0  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 539 YGAGYELPADLKTQTAFST 595
           YGAGY+L A  K  T  ST
Sbjct: 78  YGAGYDLAARRKNATREST 96


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 306 KYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKD 461
           K P G+PS   T ++LP T  T+ S   P+   RS+  +  + P  ++   D
Sbjct: 69  KSPQGAPSPSSTPSSLP-TQRTSTSN--PTYSSRSVMTSCSSVPTTASYGSD 117


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 362 CNWKCRCRPQTRRGSCWVFAFPRCGP 285
           CN K  C+ ++   SC V   P   P
Sbjct: 135 CNGKPDCKDESDENSCTVETDPNRAP 160


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 141 MYHLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFP 245
           +Y L+    D  + + V YW +    N   I G P
Sbjct: 256 LYELIDRKYDENVDYQVRYWLQKGAPNNKLILGIP 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,831
Number of Sequences: 336
Number of extensions: 3410
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)