Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00249
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 29   4.0  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 29   4.0  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  29   4.0  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   5.3  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   9.2  

>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -2

Query: 278 RAQTVRSHVAPREASYLVKVSHFSFSPVIDMVYQPSVDRDLHEVVHTEVGYWGVRIQQ 105
           +A  + +H++ R  + +  +SH +  PVI  V+  +  +   ++ HT +   G+R Q+
Sbjct: 269 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWLTR-GIRFQR 325


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -2

Query: 278 RAQTVRSHVAPREASYLVKVSHFSFSPVIDMVYQPSVDRDLHEVVHTEVGYWGVRIQQ 105
           +A  + +H++ R  + +  +SH +  PVI  V+  +  +   ++ HT +   G+R Q+
Sbjct: 254 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWLTR-GIRFQR 310


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +3

Query: 231  IRGFPRSYM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRS 410
            I G P S   +NS ++S  ATTR++  PT   S    +   P T+ +T  +   +A+  +
Sbjct: 935  INGAPVSKT-SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASA 992

Query: 411  LSGAL--QTSPG 440
            ++G++  +TS G
Sbjct: 993  INGSITSKTSTG 1004


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 285 RATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPK 458
           +ATT  +   T +P  + T    P+TS  T++  +   R         ++ G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 276 SSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTR 452
           S  R  T  +   T +P    TTA+L  T+ ETT + L  +A   + +  L T+P  +T 
Sbjct: 48  SEKRKKTTTASLATTAPET--TTASLVTTAPETTTASLATTAPETTTASFLTTAPEATTA 105

Query: 453 PK 458
           P+
Sbjct: 106 PE 107


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 102 PHLCRSLAQRRLPILPLTVFLPVK 31
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,198,312
Number of Sequences: 59808
Number of extensions: 453569
Number of successful extensions: 1177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)