Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00249
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 30 1.5
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 28 8.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.1
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 216 TNLDKIRGFPRSYM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPS 395
T+ +R + S R+S RA + ++ PTG+P+ T PVT+ T++S + P+
Sbjct: 152 TSTPVVRNILQQLTTPRSARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPA 208
Query: 396 AR 401
A+
Sbjct: 209 AQ 210
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 276 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSGALQTSPGLST 449
SS +TT + T +PS T T+P T+ + + R +G L TS + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398
Query: 450 RPKDRRC 470
P C
Sbjct: 399 PPYPENC 405
>AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical
protein Y111B2A.9b protein.
Length = 326
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 116 VLPNTLLRYVPPREDPDRQRAGTPCRLL 199
V P+ L+ PP DP QR+GTP LL
Sbjct: 4 VSPSNLVFPPPPSPDPYTQRSGTPSALL 31
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 261 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 440
T + ++ TT + T +P+ TT T P T+ TTA + + T
Sbjct: 255 TTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTT 314
Query: 441 LSTRPK 458
+T PK
Sbjct: 315 TTTTPK 320
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 27.9 bits (59), Expect = 8.1
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Frame = +3
Query: 276 SSV-RATTRESKYPT------GSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTS 434
SSV +ATT S PT S TTA LP T+ TT + S + AL T+
Sbjct: 224 SSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPTTTSTTFAAPQASTEPSEATEALATA 283
Query: 435 --PGLSTRPKDRRCLRIF*KF*RHSKSERDLAKTA 533
L T+P R I S S L KTA
Sbjct: 284 TPADLPTKPSGREITTITGTRKLSSTSTTKLPKTA 318
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 276 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 455
S+ R +TR S T S T T+ + +T + + P +GRSLS + + R
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371
Query: 456 KDRR 467
RR
Sbjct: 2372 PPRR 2375
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 276 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 455
S+ R +TR S T S T T+ + +T + + P +GRSLS + + R
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371
Query: 456 KDRR 467
RR
Sbjct: 2372 PPRR 2375
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 276 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 455
S+ R +TR S T S T T+ + +T + + P +GRSLS + + R
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371
Query: 456 KDRR 467
RR
Sbjct: 2372 PPRR 2375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,807
Number of Sequences: 27780
Number of extensions: 332675
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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