Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00249
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.75 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 212 FSFSPVIDMVYQPSVDRDLHEVVHTEV 132
           FSF     +VY+PS  R  HE+  T+V
Sbjct: 507 FSFHQWGILVYEPSACRPRHEIRSTDV 533


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 173 SVDRDLHEVVHTEVGYWGVRIQQVLICVVVWLRGG 69
           S+DR +H       G W  R   V    VVWL  G
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAG 154


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 342 TATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKDR 464
           T TLP  S T      PSA   + +     + G +T P  R
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRR 265



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 270 LRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLL 389
           L     +T+  +   T + +   TTAT   T+ TTA+ L+
Sbjct: 94  LHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLI 133


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 PYFGMYH-LVKIPIDRGLVHHVDYWGEGKVTNLDKI 233
           P +  +H L++IP D    + +D W     + L+KI
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 PYFGMYH-LVKIPIDRGLVHHVDYWGEGKVTNLDKI 233
           P +  +H L++IP D    + +D W     + L+KI
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 245 SELHVNEQFALVSKGHNEGKQIP 313
           S +++++  A V + + EGK+IP
Sbjct: 238 SNINISQVIACVGQQNVEGKRIP 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,818
Number of Sequences: 438
Number of extensions: 3630
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)