Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00249
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10830.1 68414.m01244 sodium symporter-related contains five ...    30   1.9  
At1g19680.1 68414.m02453 expressed protein                             29   4.3  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    27   10.0 

>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 645 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 559
           KL  W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 119 LPNTLLRYVPPREDPDRQRAGTPCRLLGRRKSD 217
           LP+     +PPR  P R+  G+P + L R+ SD
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSD 180


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 511 SVTWQKRLILWSRVRTARRLEDPDGIQHEDGLCRRNVNQQPLVQL 645
           S+T    L+ W+R   AR LED +  +  D     N N Q + ++
Sbjct: 487 SITMDDTLVDWARPLMARALEDGNFNELADARLEGNYNPQEMARM 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,155
Number of Sequences: 28952
Number of extensions: 312674
Number of successful extensions: 812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)