Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00248X
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 162 3e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 162 4e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 162 4e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 95 8e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 2e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 74 2e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.004
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.005
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.005
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.009
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.016
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.050
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.15
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.20
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.35
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 0.82
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 28 1.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 1.9
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 4.4
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 7.6
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 7.6
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 7.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 162 bits (394), Expect = 3e-41
Identities = 81/119 (68%), Positives = 92/119 (77%)
Frame = +3
Query: 159 QTYHREVREGGPGNG*RILQICLGIGQTKG*AELGITIDIALWKFETSKYYVTIIDAPGH 338
+ + +E E G G+ + + + K E GITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 339 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 515
RDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV V K
Sbjct: 96 RDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 139 bits (336), Expect = 3e-34
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = +1
Query: 55 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 234
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 235 DKLKAER 255
DKLKAER
Sbjct: 61 DKLKAER 67
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 162 bits (393), Expect = 4e-41
Identities = 80/119 (67%), Positives = 92/119 (77%)
Frame = +3
Query: 159 QTYHREVREGGPGNG*RILQICLGIGQTKG*AELGITIDIALWKFETSKYYVTIIDAPGH 338
+ + +E E G G+ + + + K E GITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 339 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 515
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV V K
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 139 bits (336), Expect = 3e-34
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = +1
Query: 55 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 234
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 235 DKLKAER 255
DKLKAER
Sbjct: 61 DKLKAER 67
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 162 bits (393), Expect = 4e-41
Identities = 80/119 (67%), Positives = 92/119 (77%)
Frame = +3
Query: 159 QTYHREVREGGPGNG*RILQICLGIGQTKG*AELGITIDIALWKFETSKYYVTIIDAPGH 338
+ + +E E G G+ + + + K E GITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 339 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 515
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV V K
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 139 bits (336), Expect = 3e-34
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = +1
Query: 55 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 234
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 235 DKLKAER 255
DKLKAER
Sbjct: 61 DKLKAER 67
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 94.7 bits (225), Expect = 8e-21
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +3
Query: 255 ELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 434
E G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG
Sbjct: 299 EKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGF 358
Query: 435 SKNGQTREHALLAFTLGVKQLIVGVTK 515
+ GQTREHA+LA T G+ L+V + K
Sbjct: 359 ERGGQTREHAVLARTQGINHLVVVINK 385
Score = 78.6 bits (185), Expect = 6e-16
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1
Query: 67 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 246
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 247 AER 255
ER
Sbjct: 296 EER 298
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.5 bits (222), Expect = 2e-20
Identities = 44/85 (51%), Positives = 55/85 (64%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
NGQTREHA L LG+ +++V V K
Sbjct: 300 NGQTREHAYLLRALGISEIVVSVNK 324
Score = 72.9 bits (171), Expect = 3e-14
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +1
Query: 67 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 246
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 247 AERS 258
ER+
Sbjct: 235 EERA 238
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.7 bits (173), Expect = 2e-14
Identities = 38/85 (44%), Positives = 54/85 (63%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 440
GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP----- 155
Query: 441 NGQTREHALLAFTLGVKQLIVGVTK 515
QTREH LLA +GVKQ++V + K
Sbjct: 156 --QTREHLLLARQVGVKQIVVYINK 178
Score = 35.1 bits (77), Expect = 0.007
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 61 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 147
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +3
Query: 291 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 470
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 471 AFTLGVKQLIVGVTKW 518
+ K +G W
Sbjct: 200 RISFVNKMDRMGADPW 215
Score = 29.1 bits (62), Expect = 0.47
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGI 156
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 55 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 150
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 55 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 150
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 401
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.009
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 261 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.62
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCG 150
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.016
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.050
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 309 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 488
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 489 KQLIV 503
K +I+
Sbjct: 163 KHIII 167
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 49 PKMGKEKTHINIVVIGHVDSGKST 120
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 282 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 306 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 416
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.35
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 318 IIDAPGHRDFIKNMITGTSQADCAVLIV 401
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.82
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 252 AELGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 356
AE + I+I + E +++ T+ID PG DFI N
Sbjct: 67 AEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 329 SINDGNIVLASFELPESNIDCDTKLRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 150
S++ + L S+ P S T L A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -3
Query: 392 HSAISLRGSCDHVLD--EISVSRSINDGNIVLASFELPESNID-CDTKLRSAFSLSNTQA 222
H ++ S ++D +S+ +SIN + SF +++ CD ++ S FS NT +
Sbjct: 249 HYVFAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSVHFCDRQIFSKFSAVNTAS 308
Query: 221 YLKDPLPISWASFSNFSMVRLS 156
K I ASFS S + L+
Sbjct: 309 TSKTSDTIERASFSKPSFIFLT 330
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 321 IDAPGHRDFIKNMITGTSQADCAVLIV 401
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 295 SNFQRAISIVIPSSAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWW 116
SN +R ++ V +PK I I++ F P S S C+Y S D W
Sbjct: 13 SNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWR 72
Query: 115 T 113
T
Sbjct: 73 T 73
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 196 PGPPSRTSRWYVCQYHHIC 140
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 277 ISIVIPSSAQPLVCPIPKHI*RILYPFPGPPSRTSR 170
+++VIP PLV I H R+ P GP + +R
Sbjct: 71 VNLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAAR 106
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 91 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERSLVS 267
I HV G+ L + GG RTIE E E + KG++ + + + + SL++
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDHYMIKEICEQPDSLLN 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,632
Number of Sequences: 5004
Number of extensions: 45103
Number of successful extensions: 172
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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