Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00247
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 44 1e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 43 3e-04
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 42 5e-04
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 40 0.002
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 40 0.002
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 37 0.019
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 36 0.034
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 32 0.55
09_01_0004 - 133130-133897 29 3.9
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 29 5.1
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 9.0
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 9.0
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +1
Query: 115 KNYFKIFAIRKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWK 288
+ +F++ + K K +KPKRP SA+ +++ R+ K ++P ++ V+ K GG+ WK
Sbjct: 16 RGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWK 75
Query: 289 SMKD 300
SM D
Sbjct: 76 SMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +1
Query: 166 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMKDK 303
K KRP +A+ L+++ R++ K+E+P + V+ K+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
KK K + PKR M+ +M + + R +K+ NP L T+ KK GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
KK K + PKR ++ +M + + R +K+ NP L T+ KK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMKDK 303
RKK + KPKRP SA+ ++++ R++ ++ +P + V K GE W++M ++
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 124 FKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMKD 300
FK RKK KPKR ++ + +L R Q ++P + V K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 301 K 303
+
Sbjct: 70 E 70
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
+KK K KPK+PMSAY ++ R + +E V + + GE WK+M +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM--KDKTEWXXXXXXXX 336
++PK+P S+++L+ AR Q+ E PG+ + WK + +K W
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 337 XXXXXDLESY 366
D+E Y
Sbjct: 472 AAYKRDMEEY 481
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 148 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
K K + K+P AY+LW +IK E+P + G WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 166 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSM 294
+PK+P +A+ ++ R+ K ENP ++ + + K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>09_01_0004 - 133130-133897
Length = 255
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 363 LQCQWRWWRRGRKEGSKTREKG 428
L+C+ RWWRR R+ G G
Sbjct: 93 LRCRERWWRRRRRTGDAAEAAG 114
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Frame = +3
Query: 363 LQCQWRWWR-----RGRKEGSKTREKG 428
LQC+ RWWR RGR G + R G
Sbjct: 21 LQCRERWWRRRPVHRGRGRGGRRRRSG 47
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 219 FPRAV*PQHVCGHRTLRLVRHFDFFPDGKNFEIIFELVHN 100
FPR+ + C H T + R + PDG+ EI++ HN
Sbjct: 320 FPRSY---YKCTHPTCPVKRKVEMTPDGRIAEIVYNGEHN 356
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 219 FPRAV*PQHVCGHRTLRLVRHFDFFPDGKNFEIIFELVHN 100
FPR+ + C H T + R + PDG+ EI++ HN
Sbjct: 321 FPRSY---YKCTHPTCPVKRKVEMTPDGRIAEIVYNGEHN 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,674
Number of Sequences: 37544
Number of extensions: 301995
Number of successful extensions: 862
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -