Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00247
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 77 1e-14
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 44 1e-04
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 42 4e-04
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 40 0.002
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 40 0.002
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 40 0.002
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 38 0.006
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 38 0.009
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 38 0.011
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 37 0.015
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 36 0.026
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 36 0.046
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 34 0.11
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 31 0.98
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 31 1.3
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 30 1.7
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 30 2.3
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 28 6.9
SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07) 28 9.1
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTEWXXXX 324
KK K + PKR MSAYMLWLN R++IK +NPG+ VT+ K GE+WK++ DK++W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKA 593
Query: 325 XXXXXXXXXDLESYNAN 375
++ YN N
Sbjct: 594 AIEKQKYVQRMKEYNEN 610
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 151 VKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
VK + KRPM+A+M+W R +I ENP + ++ K+ G WK + D
Sbjct: 321 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 151 VKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
VK + KRPM+A+M+W R +I ENP + ++ K+ G WK + D
Sbjct: 4 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM--KDKTEW 312
+K+ K +KPKR +SAY ++N R+ +K +NP K GE+W M DKT++
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQY 151
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
K +KPK SAY +L RE+++ E + K E WK+M ++
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEE 56
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 160 TDKP--KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
T KP KRPM+A+M+W +AR ++ + P L + K G++WK + D
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 148 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
K D+ KRPM+A+M+W R ++ +NP + ++ K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
KRPM+A+M+W + R Q+ +ENP L ++ K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 142 RKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
RKK K + PK P++ Y+ +LN RE+++SENP L + + G +W +
Sbjct: 167 RKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQL 218
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
KRPM+A+M+W + R Q+ +ENP L ++ K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
KRPM+ +M+W R QI ENPG+ + K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/54 (24%), Positives = 33/54 (61%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
++K K+ +P +P+SAY ++ + I+ +NP + + K G++W+++ ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEE 969
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
K K KRPM+++M+W SAR ++ + P + + K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
D KRP++++M+W R + ENP +R + K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 115 KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQI--KSENPGLRVTK*PKKGGEIWK 288
+ Y K K DKPKRP +AY L+L + R+++ K+ G ++ P GE W+
Sbjct: 559 QRYLKESGKNDPKKDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKI---PSLAGERWR 615
Query: 289 SMKDK 303
M D+
Sbjct: 616 EMSDE 620
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 178 PMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
P+SA+ LW N AR+ + NP + K KK WK + +K
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEK 271
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
++PK P+++Y + R ++ + P L+ T+ K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLW---LNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
RKK +KPK P++ Y+ + LNS RE +K ++P L + K G+ W S+
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSL 238
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
KK KRPM+A+M+W R ++ E+P + + K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
K D KRPM+AYM+W R +I E P + ++ K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 160 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
T++ KRPM+A+M+W R ++ NP L + K G W+++
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
KRPM+++M+W R + ENP L + K G+ W + K
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTK 138
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKS-ENPGLRVTK*PKKGGEIWKSMKDK 303
KRPM+A+M+W + R +IKS E P + ++ K G WK+MKD+
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 160 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
++K KRP++A++LW R I +ENP + +K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 169 PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
P++P+ YM + +Q+K++NP ++ K G++W+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 166 KPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTE 309
K KRPM+A+M+W R I P + + GEIW + + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMK--DKTEW 312
D+ + + + LWL R+QI+ ENP + K + WK + +K W
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVW 378
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
D+ + + + LWL R+QI+ ENP + K + WK +
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
K PM+A+M+ R+ S NPG+ ++ K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 172 KRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
KRPM+A+M+W + R ++ + P + + K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/108 (19%), Positives = 52/108 (48%)
Frame = +3
Query: 111 VQKLFQNFCHQEKSQNDGQAEASYVRIHAVVKQREGTDKI*KSWLKSNEIAKKRR*NLEI 290
VQK+ + +++ Q + Q A + + ++RE ++ + + N +A++ N+E
Sbjct: 2378 VQKIIKQ---RQEEQRESQRRARLLEEQRLREEREEMERARRELEEKNRLAERENLNMEY 2434
Query: 291 NERQN*MGTESCQGQGAICKRPRILQCQWRWWRRGRKEGSKTREKGQE 434
+E + M ++ Q R+ Q+ +++ KE + +R G++
Sbjct: 2435 SENERAMESDKFQNVN------RLDLSQFSQYQKNGKEEAVSRPAGKQ 2476
>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 641
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 159 HFDFFPDGKNFEIIFELVHNQTVDVENVKKCMGL 58
H DFF DG ++ ++ H++ +DV+++ L
Sbjct: 579 HIDFFHDGNDYFLVVIDSHSKWIDVQHITSTTAL 612
>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
Length = 187
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 642 HLMRVGIIFNCNWYFVYKMPLNNSFLD 722
H GI+ C W F+Y PL + D
Sbjct: 140 HASIAGIVAGCAWKFLYADPLKKKYAD 166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,921,355
Number of Sequences: 59808
Number of extensions: 366211
Number of successful extensions: 987
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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