Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00247
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 48 9e-06
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 47 1e-05
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 47 1e-05
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 47 2e-05
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 42 5e-04
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 40 0.002
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 38 0.010
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 36 0.030
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 36 0.030
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 36 0.030
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 36 0.030
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 36 0.030
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 33 0.21
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 33 0.21
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 33 0.21
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 33 0.21
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 29 2.6
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 29 3.5
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 29 3.5
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 29 4.6
Z81486-6|CAB03988.2| 309|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 28 6.0
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 28 6.0
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMK--DKTEWXX 318
KK K ++PKR +AY++W N+ R +K + L KK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKEDGDTLGDV--AKKAGAKWKSMSADDKKEWND 610
Query: 319 XXXXXXXXXXXDLESYNAN 375
+++ Y N
Sbjct: 611 KAAQDKARYEAEMKEYKKN 629
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +1
Query: 148 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTEWXXXXX 327
K K + PKR MSA+ W+ RE+IK PG+ V K G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 328 XXXXXXXXDLESY 366
D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +1
Query: 148 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTEWXXXXX 327
K K + PKR MSA+ W+ RE+IK PG+ V K G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 328 XXXXXXXXDLESY 366
D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMK--DKTEWXX 318
KK K + PKR SAYM W ++R ++K + G V KKGG WK+M DK +W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 319 XXXXXXXXXXXDLESYNAN 375
+++ Y N
Sbjct: 606 KAEEDKSRYEKEMKEYRKN 624
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
K D+ KRPM+A+M+W R+++ ENP + ++ K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
D KRPM+A+M+W R ++ +NP + ++ K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
K ++ KRPM+A+M+W R +I P + + K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
R + K + KRPM+A+M+W R +I P + + K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
R + K + KRPM+A+M+W R +I P + + K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
R + K + KRPM+A+M+W R +I P + + K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
R + K + KRPM+A+M+W R +I P + + K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
R + K + KRPM+A+M+W R +I P + + K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 142 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTE 309
RK+ K PKR +SA+ + R +I++ +P +V + ++ G++WK + +T+
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 142 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTE 309
RK+ K PKR +SA+ + R +I++ +P +V + ++ G++WK + +T+
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 142 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTE 309
RK+ K PKR +SA+ + R +I++ +P +V + ++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 142 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDKTE 309
RK+ K PKR +SA+ + R +I++ +P +V + ++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 169 PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
P+RP+ YM + ++++ENP ++ K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 236 FSDFICSLALFNHSMYADIGRFGLSVILTFFL 141
FS F C A N SM +FGL I+ FF+
Sbjct: 28 FSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 236 FSDFICSLALFNHSMYADIGRFGLSVILTFFL 141
FS F C A N SM +FGL I+ FF+
Sbjct: 28 FSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 347 AYCSLALAAFCSHSVLSFIDFQISPPFFGYFVTLKPGF 234
A L++AA ++ SF+ F S P Y +KPGF
Sbjct: 149 AILQLSIAAVANY--YSFLSFPFSQPVMNYCTAVKPGF 184
>Z81486-6|CAB03988.2| 309|Caenorhabditis elegans Hypothetical
protein C53A5.8 protein.
Length = 309
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 287 FQISPPFFGYFVTLKPGFSDFICSLALFNHSMYADIG 177
FQ PP FGY + G S + +L+L + D+G
Sbjct: 255 FQFCPPSFGYIFNMSLGISSDLITLSLPYILLIFDVG 291
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 157 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
MT K + S Y+L+ R++I ENP + K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 157 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
MT K + S Y+L+ R++I ENP + K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 157 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
MT K + S Y+L+ R++I ENP + K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,298
Number of Sequences: 27780
Number of extensions: 283244
Number of successful extensions: 817
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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