Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00247
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.0  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.2  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   9.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   9.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 729  ILNQEMNYLMAFYKQNTSCS*R*FQLSLNVNQNQCQMHFIQTLES 595
            IL    N L+ F     + + R  +LSL  N   C+  F+Q L S
Sbjct: 894  ILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSS 938


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 196 LWLNSAREQIKSENPGLRV 252
           +W  + R + K +NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 378 RWWRRGRKEGSKTREKG 428
           RWW R R+    T + G
Sbjct: 44  RWWSRPREPAQTTSKAG 60


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  RRPQASFDWEHFVRAP 65
           R  +ASFD E++ RAP
Sbjct: 96  RGKKASFDDEYYKRAP 111


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  RRPQASFDWEHFVRAP 65
           R  +ASFD E++ RAP
Sbjct: 97  RGKKASFDDEYYKRAP 112


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  RRPQASFDWEHFVRAP 65
           R  +ASFD E++ RAP
Sbjct: 96  RGKKASFDDEYYKRAP 111


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  RRPQASFDWEHFVRAP 65
           R  +ASFD E++ RAP
Sbjct: 96  RGKKASFDDEYYKRAP 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,307
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)