Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00247
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 45 5e-05
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 45 6e-05
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 44 8e-05
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 44 8e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 42 3e-04
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 41 7e-04
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 41 0.001
At3g28730.1 68416.m03587 structure-specific recognition protein ... 40 0.002
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 39 0.003
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 37 0.016
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 34 0.086
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 32 0.46
At5g42750.1 68418.m05206 expressed protein 31 0.61
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 30 1.9
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 30 1.9
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 29 2.4
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 29 3.2
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 29 3.2
At3g24110.1 68416.m03027 calcium-binding EF hand family protein ... 28 5.7
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ... 28 7.5
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 7.5
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
+K ++KPKRP++A+ ++++ R+ KSE+ G K GGE WKS+ ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
KK+K KPK+P+SAY+++ N R +K EN V + K GE WK++ ++
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEE 288
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPGL 246
+KPK+P S+Y L+ AR+ + E+PG+
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGI 397
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
+KK K + KRP + Y+LW ++K +NP + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMK--DKTEW 312
+K K +KPKR SA+ ++L R K ENP ++ V+ K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 313 XXXXXXXXXXXXXDLESYNAN 375
+++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMK--DKTEW 312
+K K +KPKR SA+ ++L R K ENP ++ V+ K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 313 XXXXXXXXXXXXXDLESYNAN 375
+++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTK*PKKGGEIWKSMKD 300
K +KPKRP SA+ +++ RE K ENP V K G+ WKS+ D
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKDK 303
KK K KPK P+SA++++ N R ++ EN V + K GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDK 297
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 136 AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
A +KK K + KRP S+Y+LW ++K ENP + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 163 DKPKRPMSAYMLWLNSAREQIKSENPG 243
+KPK+P S+Y L+ R+++ E PG
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPG 403
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 154 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTK*PKKGGEIWKSMKD 300
K +KPKRP SA+ +++ R K E+P V K GGE WKS+ D
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 145 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSM 294
KK K + PKR MS +M + R+ IK E+PG+ + K G+ W+ M
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 142 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSM 294
+K VK+ K PK+P +A+ +L+ R+Q + ENP ++ + + K GE WK+M
Sbjct: 53 KKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMKDK 303
+K K ++PKRP SA+ ++L R++ NP + V K G WK+M D+
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDE 80
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 139 IRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTK*PKKGGEIWKSMKDK 303
+ KK K ++PK+P S + ++L+ R++ NP + V + G+ WK+M ++
Sbjct: 24 VGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 169 PKRPMSAYMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
PKR + Y ++ +IK+EN G +V+ PK G +W ++ +
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSS-PKNFGNMWTNLSE 257
>At5g42750.1 68418.m05206 expressed protein
Length = 337
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +2
Query: 11 RRETAPS*LRLGTFCSSPIHFFTFSTSTVWLCTSSKIISKFLPS 142
++E +PS + + CSSP H F+F+ S L +SSK IS L S
Sbjct: 22 KQEASPS--PISSTCSSPSHDFSFTISLQPLSSSSKHISPTLRS 63
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 148 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
K K T+K K S + +++N R+ +++ G V + K G E+WKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 148 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTK*PKKGGEIWKSMKD 300
K K T+K K S + +++N R+ +++ G V + K G E+WKSM +
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -3
Query: 177 TLRLVRH-FDFFPDGKNFEIIFELVHNQTVDVENVKKCM 64
+L LV+H +D + +G+ EII +L+ +T D V KC+
Sbjct: 726 SLNLVKHIWDRWENGEAIEIIDKLMGEETYDEGEVMKCL 764
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 442 QQFSCPFSLVFEPSFRPLRHH 380
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 442 QQFSCPFSLVFEPSFRPLRHH 380
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At3g24110.1 68416.m03027 calcium-binding EF hand family protein
contains Pfam profile: PF00036 EF hand, similar to
calcium-modulated proteins
Length = 229
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Frame = -3
Query: 186 GHRTLR----LVRHFDFFPDG-KNFEIIFELVHNQT---VDVENVKKCM 64
GHR+L+ ++ F +G +N +FE N T +D+E +KKC+
Sbjct: 34 GHRSLKSMDSIIMKFPKLREGLRNIRSVFESYDNDTNGTIDIEELKKCL 82
>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
(Crd1) similar to leucine-containing zipper protein
At103 GP:6911864; contains Pfam profile PF05447: Copper
response defect 1 (CRD1)
Length = 409
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 93 QFGCVPVQKLFQNFCHQEKSQND 161
+F C P+ K F+N+C E D
Sbjct: 239 EFQCYPIFKYFENWCQDENRHGD 261
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 320 FCSHSVLSFIDFQISPPFFGYFVT 249
FC+ SV ++FQI PP +VT
Sbjct: 139 FCADSVFPLLNFQIDPPVQKLYVT 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,286
Number of Sequences: 28952
Number of extensions: 256285
Number of successful extensions: 708
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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