Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00246X
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   0.43 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   1.3  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   1.7  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.0  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    24   7.0  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    24   7.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   7.0  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    24   7.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   7.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   9.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   9.3  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    24   9.3  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    24   9.3  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 288 FAIKSRDLRSIKGVKLKMAIKVSVHDGGNLA 380
           FA++ ++L   KGV L M     +HDG  L+
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLS 109


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 367 PSWTDTLIAILSLT-PLIERRSRLLIAKSGRIASSSGKP*LSKALH 233
           PS  D  IA   L  P IER   L + K  R    S +   S+ LH
Sbjct: 341 PSTVDMHIAFTGLNKPTIERERNLKLRKKSRFYKKSLRSRFSRGLH 386


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 144 FHYFGKHSGCEVIVS---IFEYIREICDGCHCRDGDSKQTNDCLH 19
           F  FG+H  CEV+++   +  +  EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  NLSNVLKNGNDNFTARMFTEVV 141
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 25  TIICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSA 177
           T +C F + IA      N S +LKN   +     +  ++KN  G  ++  A
Sbjct: 351 TSVCWFLLDIAFYGVNLNQSVILKNIGFSTGTNEYRTLMKNAIGNLIIAVA 401


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 28  IICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSV 186
           II + T+          L++ L +  +NF       V+K  PGK   +S F++
Sbjct: 25  IIVMTTLVFNGHDYKQTLNDRLTSLKNNFVEENDNAVLKEEPGKYTYMSLFTM 77


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 291 AIKSRDLRSIKGVKLKMAIKVSVH 362
           A K+RDL+SI+G ++ + I V  +
Sbjct: 644 AAKTRDLKSIRGHEISVQIHVDTN 667


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 25  TIICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSA 177
           T +C F + IA      N S +LKN   +     +  ++KN  G  ++  A
Sbjct: 352 TSVCWFLLDIAFYGVNLNQSVILKNIGFSSGTNEYRTLMKNAIGNLIIAVA 402


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 37  LFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVL 189
           L  +  +A + VT+    ++NG D FT     +V  +N   S   S  ++L
Sbjct: 145 LMPLETSAYSLVTSTPAYIQNGLDTFTIAKLRQVYGSNSLVSTKKSIVTIL 195


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 123  SGCEVIVSIFEYIREICDGCHC 58
            S C   +S F +   IC  CHC
Sbjct: 1106 SKCNSTMSPFWWPGNICQACHC 1127


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -3

Query: 367 PSWTDTLIAILSLTPLIERRSRLLIAK--SGRIASSSGKP*LSKALHWFHHQKLKLTERE 194
           PSW   L  +  + PL+ER    L+A+   GR ++   K    + +      +L+     
Sbjct: 655 PSWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSTGVAKQITKQRVDSHQDLELRAAVMN 714

Query: 193 EAAPKMPRGQR 161
           +    +P G R
Sbjct: 715 DILDMIPEGIR 725


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 288 FAIKSRDLRSIKGVKLKMAIKVSVHDGGN 374
           FAI + D RS+ G  +    +  VH+ G+
Sbjct: 24  FAILAGDTRSVNGYNINTRFQPRVHEVGD 52


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -3

Query: 376 RFPPSWTDTLIAILSLTPLIERRSRLLIAKSGR 278
           R+ P+W   ++    +TP+I   +R+++A+  +
Sbjct: 482 RYYPAWIVQIVVAWFVTPIIYLVARVILARRNK 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,896
Number of Sequences: 5004
Number of extensions: 27430
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)