Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00246X
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 30 0.54
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 1.6
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 2.9
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 2.9
10_02_0112 + 5385660-5385821,5386337-5386876 27 3.8
06_03_0300 + 19299378-19299688,19299839-19300268 27 5.0
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937... 27 5.0
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 27 6.6
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 27 6.6
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 26 8.7
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 26 8.7
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734... 26 8.7
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 30.3 bits (65), Expect = 0.54
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 196 LAQLALASDGETNEE--LLKAMASLTTMLYDQISRLKAVIFVQLKALSLKWRLRYPSMM 366
+A LA+ + +T E + + M +T + D K V+ +++L LK+ L+Y SMM
Sbjct: 266 IATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSMM 324
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 307 SRLLIAKSGRIASSSGKP*LSKALHWFHHQKLKLTEREEAAPK 179
+RLL G + SS +P + + H QK+ L + E A P+
Sbjct: 1792 TRLLAVNGGLVPESSLRPLIGRNSHILKQQKINLLDIEAALPE 1834
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 129 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 25
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 129 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 25
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 31 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPGKSVVLSAFSVLPPLAQ 204
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 205 LALASDGETNEELLK 249
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
>06_03_0300 + 19299378-19299688,19299839-19300268
Length = 246
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -1
Query: 135 FGKHSGCEVIVSIFEYIREICDGCHCRDGDSKQTNDCLH 19
F K CE I+ +Y+ + + CR D+K H
Sbjct: 111 FPKSYDCEYILVAVDYVSKWVEAMPCRAADAKHARQMFH 149
>05_04_0085 +
17790417-17790714,17791826-17791869,17793658-17793793,
17794315-17794391,17794646-17794706,17794707-17794924,
17795168-17795412,17796032-17796401,17796916-17797344
Length = 625
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 235 EELLKAMASLTTMLYDQISRLKAVIFVQLKALSL 336
EE+L TT YD +SRLK V + + L L
Sbjct: 461 EEVLHHFGRTTTPDYDSLSRLKIVTMILYEVLRL 494
>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 81 EICDGCHCR 55
E CDGCHCR
Sbjct: 1322 EYCDGCHCR 1330
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 129 KHSGCEVIVSIFEYIREICDGCHC--RDGDSKQTNDC 25
++ ++ V + Y CDGC C D D +DC
Sbjct: 361 RYDAADIKVGFYLYTDGRCDGCACIDSDDDDDDGDDC 397
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -1
Query: 135 FGKHSGCEVIVSIFEYIREICDGCHCRDGDSKQTNDCLH 19
F K CE I+ +Y+ + + CR D+K H
Sbjct: 341 FPKSYDCEYILVAVDYVSKWVEAIPCRAADAKHARRMFH 379
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 26.2 bits (55), Expect = 8.7
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +1
Query: 67 AVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETNEELL 246
AV LS +G D+ +F E + V + LPP T E ++
Sbjct: 170 AVRALSRFASDGEDSDIVDLFLETFEKEQNVEVRKAIILSLPP--------SNATLETVI 221
Query: 247 KAMASLTTMLYDQISRLKAVIFVQ-LKALSLKWRLRYPS 360
++ T++L+ +S A + + LK L +W ++Y S
Sbjct: 222 ESTLDRTSLLHRGLSDRSASVNSECLKMLKDEWLMKYCS 260
>02_03_0293 -
17372071-17372217,17372301-17372471,17373334-17373435,
17373803-17374216,17374369-17374512,17374634-17375647
Length = 663
Score = 26.2 bits (55), Expect = 8.7
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 133 EVVKNNPGKSVVLSAFSVLPPLAQLALASDGETNEELLKAMASLTTMLYDQISRLKAVIF 312
E+++ G S+ S LP LA A A + + + +L D +SRL A
Sbjct: 35 ELMRVLVGDSIPDPPVSTLPRLAPAAAARAPADGVDRISRLPD--ELLRDVVSRLPARDG 92
Query: 313 VQLKALSLKWR 345
+ ALS +WR
Sbjct: 93 ARTAALSTRWR 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,722
Number of Sequences: 37544
Number of extensions: 184230
Number of successful extensions: 565
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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