Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00246X
(381 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 1.7
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 2.9
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_51461| Best HMM Match : DRMBL (HMM E-Value=2.6) 27 5.2
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 27 5.2
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_29916| Best HMM Match : DUF24 (HMM E-Value=4.3e-35) 27 5.2
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.8
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 58 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 225
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 1.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 66 CHCRDGDSKQTNDCL 22
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQFGL 79
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQFGL 73
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F L
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQFGL 30
>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRF 158
H+ L + ER+ ++PK PR +F
Sbjct: 21 HENLSINERDSSSPKRPRQHQF 42
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 118 ARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETNEELLKAMAS 261
+R + +N GK+V L PP+AQ + S T +++LKA A+
Sbjct: 481 SRFGVQYYNSNNGKNVALVK---QPPVAQTTVPSQETTAQQMLKAAAA 525
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 238 LHWFHHQKLKLTEREEAAPKMPRG 167
LHW +HQ KL ++ +P P G
Sbjct: 291 LHWRNHQHSKLDSKQLGSPNGPNG 314
>SB_51461| Best HMM Match : DRMBL (HMM E-Value=2.6)
Length = 455
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 144 FHYFGKHSGCEVIVSIFEYIREICDGCHCRDGDSKQTNDCLHVCG 10
FH G + E+ S F + E+ D C GD + + C H G
Sbjct: 294 FHAIGDY---EMFDSCFHMLYEMFDSCFHTIGDYVRIDSCFHTIG 335
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 153 WIIFHYFGKHSGCEVIVSIFEYIREICDGCHCRDG 49
W HY G E+I +IF+ +R+ + C C G
Sbjct: 57 WAKGHY---SEGAELIDNIFDVLRKEAENCDCMQG 88
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 7 QATNMKTI-ICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFS 183
Q TN + + + +A M + N+ N TAR + ++ ++V+
Sbjct: 57 QTTNSTIVDMSMSAVANCCMFDESRKENLTSTSILNRTARALANLAEDEKN-AIVIEELG 115
Query: 184 VLPPLAQLAL-ASDGETNEELLKAMASLTT 270
+ L +L ASD E E +L+A+ + T
Sbjct: 116 AIEELTKLLTDASDTECQESVLRALLKICT 145
>SB_29916| Best HMM Match : DUF24 (HMM E-Value=4.3e-35)
Length = 120
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 85 NVLKNGNDNFTARMFTEVVKNNPGKSVVL-SAFSVLPPLAQLALASDGETNEELLKAMAS 261
N L + +M + +K+ +++ ++ V+PP + L G++ LLKAM +
Sbjct: 52 NELDKSIKGISQKMLSNQLKDLEQLGIIIRKSYPVIPPKVEYRLTEKGKSLAPLLKAMKA 111
Query: 262 LT 267
T
Sbjct: 112 WT 113
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
HQ L + E + ++PK PR +F +
Sbjct: 550 HQNLSINEMDSSSPKRPRQHQFGV 573
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 109 NFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETNEELLKAMASLTTMLYDQI 288
++T R V+ GKSV+ F +LP + G TN+ ++ ++ L +++ DQ+
Sbjct: 192 SYTGRDGIGVLPTGYGKSVI---FHILPAMYDF---KRGLTNDSIIIVVSPLYSLINDQL 245
Query: 289 SRLK 300
LK
Sbjct: 246 GILK 249
>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 192 RQHRKCREDNAFPWIIFHYFGKHS 121
R HR+CR N W H FG H+
Sbjct: 291 RAHRRCRRQNGKRW---HAFGTHT 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,435,059
Number of Sequences: 59808
Number of extensions: 210302
Number of successful extensions: 737
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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