Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00246X
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 30 0.60
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 29 0.79
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 29 0.79
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 29 1.0
At5g37490.1 68418.m04515 U-box domain-containing protein similar... 29 1.4
At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserin... 27 3.2
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va... 27 4.2
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 27 4.2
At4g18530.1 68417.m02746 expressed protein contains Pfam profile... 27 5.6
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 26 7.4
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 26 9.7
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi... 26 9.7
At2g25800.1 68415.m03096 expressed protein 26 9.7
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 26 9.7
At2g19200.1 68415.m02240 expressed protein contains Pfam profile... 26 9.7
At1g67680.1 68414.m07723 expressed protein 26 9.7
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 174 REDNAFPWIIFHYFGKHSGCEVIVSIFEYIREICDG 67
R D +++F KHS CE+ VS E ++ G
Sbjct: 2 RSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASG 37
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 29.5 bits (63), Expect = 0.79
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 171 EDNAFPWIIFHYFGKHSGCEVIVSIFEYIRE 79
+D F ++ +GKH CE + IFE +RE
Sbjct: 434 KDPVFWNVMISGYGKHGECESAIEIFELLRE 464
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 29.5 bits (63), Expect = 0.79
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 EVVKN--NPGKSVVLSAFSVLPPLAQLALASDGETNEELL 246
E VKN +PGK VL +++L P AQL + + E E L+
Sbjct: 636 EQVKNKFSPGKLRVLPLYAMLSPAAQLRVFEEVEKEERLV 675
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 223 GETNEELLKAMASLTTMLYDQIS-RLKAVIFVQLKALSLKWRLRYPSMMVE 372
G NE+ + A +SL + ++I RL +QLK+LS +WR S E
Sbjct: 58 GRGNEKAVFAPSSLPNDVVEEIFLRLPVKAIIQLKSLSKQWRSTIESRSFE 108
>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 198 ERRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEYI 85
E ++RKC +N+ W++ F K SG E + + I
Sbjct: 153 ESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEI 190
>At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserine
dehydrogenase / AK-HSDH nearly identical to gb|X71364
[PIR|S46497] aspartate kinase / homoserine dehydrogenase
from Arabidopsis thaliana; contains ACT domain
Length = 911
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 196 LAQLALASDGETNEELLKAMASLTTMLYDQISRLKAVIFVQLKALS 333
+A + + D E ++ AM+ +T M+YD I R ++ L ALS
Sbjct: 103 VAAVVVKDDSERKLVVVSAMSKVTDMMYDLIHRAESRDDSYLSALS 148
>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
various ribosomal L23a proteins
Length = 154
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 289 KSGRIASSSGKP*LSKALHWFHHQKLKLTEREEAAPKMPRGQRFSLDYFSLLR 131
KSG+I K +K FH K R+ PK+ R LD++ +L+
Sbjct: 26 KSGQIVKKPAKKIRTKVT--FHRPKTLTVPRKPKYPKISATPRNKLDHYQILK 76
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 76 NLSNVLKNGNDNFTARMFTEVVK 144
NL +LKNG DN A +F +++
Sbjct: 431 NLLEILKNGTDNIGAEIFEPLIR 453
>At4g18530.1 68417.m02746 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 349
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 187 LPPLAQLALASDGETNEELLKAMASLTTMLYDQISRLKAVIFVQLKALSLKWR 345
LP L + AS NE K+ SL + D ++ FV++K +W+
Sbjct: 284 LPTLGVVETASSALRNETDSKSTESLESREVDNRPEVRMKSFVEMKRFKERWK 336
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 26.2 bits (55), Expect = 7.4
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +1
Query: 43 TIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASD 222
T+ +A + A+ L ++L++ + EV+ NNP + + PL+Q L D
Sbjct: 1687 TVQMAELGAIDALLDLLRSHQCEEESGSLLEVIFNNPRVRELKLCKYAIAPLSQYLL--D 1744
Query: 223 GETNEELLKAMASL 264
T E + +A+L
Sbjct: 1745 PHTRSEPGRLLAAL 1758
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 229 TNEELLKAMASLTTMLYDQISRLKAVIFVQLK 324
T EEL KA + L ++Y +I K +VQ K
Sbjct: 249 TEEELKKAFSQLGEVIYVKIPATKGYGYVQFK 280
>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 687
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 195 RRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEYIREICDGC 64
R Q KC ED A + +GK+S + + +F+ +REI GC
Sbjct: 70 RSQECKCDEDVALS--VIKTYGKNSMPDQALDVFKRMREIF-GC 110
>At2g25800.1 68415.m03096 expressed protein
Length = 996
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 266 VREAIAFKSSSLVSPSEAKAN*ARGGSTENAERTT 162
+++A+ +SSS +SP K++ + GS ++R T
Sbjct: 109 MKKALGLRSSSSLSPGSNKSSGSASGSNGKSKRPT 143
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 85 NVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETNEELLKAM 255
N+ KN TAR ++++ P + ++++++PP A L L T + LK +
Sbjct: 503 NISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPEALLMLCDSLRTAKGDLKRL 559
>At2g19200.1 68415.m02240 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 246
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -2
Query: 296 NREIWSYSIVVREAIAFKSSSLVSPSEA----KAN*ARGGSTENAERTTLFPGL 147
NR +W I+ + +SSS++S + + + RGG T+ +L P L
Sbjct: 33 NRVVWKSKIICTILVVSESSSMLSRASSLQFCQGEPFRGGETKRTMLVSLIPEL 86
>At1g67680.1 68414.m07723 expressed protein
Length = 664
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/68 (22%), Positives = 37/68 (54%)
Frame = +1
Query: 91 LKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETNEELLKAMASLTT 270
L++G + +R++ E+VKN+ ++ ++ LA++ + E+ E+ LK + L
Sbjct: 483 LRHGQEEEASRLYEEIVKNHNSTDALV---GLVTTLARVNV-EKAESYEKQLKPLPGLKA 538
Query: 271 MLYDQISR 294
+ D++ +
Sbjct: 539 VDVDKLEK 546
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,099,799
Number of Sequences: 28952
Number of extensions: 149355
Number of successful extensions: 524
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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