Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00245
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 31 0.23
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 30 0.31
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 30 0.40
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 28 1.2
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 6.6
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 26 6.6
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 8.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 8.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 8.7
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 663 FSGLVYLSSLDVSYNDLDDLKG 728
FS L+ L LD+SYN L+DL G
Sbjct: 664 FSNLLNLQYLDISYNQLEDLTG 685
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 31 HTGDMDTLDVSYNMLIEFNLNNTQISSLTKLLLNNNFIKTISDRTLLGLTSLKEIIVTHN 210
H + L N + E + N+ + L +LLL NN I+ I + + L +L + + +N
Sbjct: 710 HLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEE--ISSLQNLMVLQLDNN 767
Query: 211 KI 216
K+
Sbjct: 768 KL 769
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/18 (44%), Positives = 17/18 (94%)
Frame = +2
Query: 515 AFSDLKSMRFLDLSYNKI 568
+FS+L ++++LD+SYN++
Sbjct: 663 SFSNLLNLQYLDISYNQL 680
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 30.3 bits (65), Expect = 0.31
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 288 LAFNANIVKSSMYLNKLIISG--LEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELK 461
+ NAN + S+ +N I+ N S + L S LDI CSKI VQ +
Sbjct: 361 MVVNANHKRQSIQVNHFDITSDACMLNFSHV-LSRLSEPFLDIGCSKIDRVQVEYFRRNP 419
Query: 462 RLDDLKLYKNNIIKLESERF 521
R+D + K N + SE F
Sbjct: 420 RVDIKEETKLNADQKASESF 439
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 103 ISSLTKLLLNNNFIKTISDRTLLGLTSLKEI-IVTHNKIEHFSDNSL 240
ISS+T +LLN +KT+S R +G+ SL I + ++K FS +L
Sbjct: 154 ISSVTNILLNIPTVKTLSIRWCVGVCSLSLIEFLQNSKSRTFSLENL 200
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 402 LDIS-CSKITNVQKLHLNELKRLDDLKLYKNNIIKLESERFRI*NL*DFSI*ATTKFLTS 578
LD+ +T +K +L +L+R +LK YKNN+I+ ES R +L F +F ++
Sbjct: 76 LDVEWVESVTFHRKQNLEQLRR--ELKAYKNNLIR-ESIRAAQLDLASFFA-DVGQFDSA 131
Query: 579 NLGYSRITPYC 611
Y+++ YC
Sbjct: 132 LRSYAKVREYC 142
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 179 VSPSKVLSDIVLIKLLFSNNFVKLEIWVLFKLN 81
++PS+ D V I LL + N L++W++ N
Sbjct: 303 ITPSEQFLDKVFISLLSAKNSCSLKMWLIHSFN 335
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 732 FHPSDRPNRCTIHLKN 685
F P DRPN TIHL++
Sbjct: 1552 FSPKDRPNPLTIHLQS 1567
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 430 FVILEQEISRIATDEFPRPINDILGSKP 347
F+I++ + + +FPR IN IL KP
Sbjct: 1344 FMIVDSDKFYLTIPDFPRQINGILEGKP 1371
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 450 NELKRLDDLKLYKNNIIKLE 509
N LKR+ DLK NII+LE
Sbjct: 133 NTLKRIKDLKSKPKNIIQLE 152
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 733 LSPFRSSKSLYDTSKEL 683
LSPFR +K YD KEL
Sbjct: 181 LSPFRDAKGNYDWQKEL 197
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 552 KSRNLIDFKSENAPTPI*LYYFCTISNHLASLVRLNATSERLLFWNKKY 406
++ NLI KSEN P P L S + +A S ++ W Y
Sbjct: 111 QNANLISSKSENVPEPAGEKVSMPEKQDLQSALPSDAVSNAVIGWKSIY 159
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 273 SFNDKLAFNANIVKSSMYL-NKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKL 443
S K + N + ++ L N +++ G +P GLGN LDI+ + I N+ KL
Sbjct: 248 SMGSKTSGNTSATFRTVLLANNVVLLGNKP-----GLGNVGGGALDITDADIRNINKL 300
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 429 NVQKLHLNELKRLDDLKLYKNNIIKLESERFRI*NL*DFSI*ATTKFLTSNLGYSRIT 602
++Q L + R+D+L++ +NN + ER I ++ D S+ F+ +S IT
Sbjct: 980 SIQLLQKETMLRIDELEIERNNTL---LERLAIGHVLDDSVFRNRDFIKLASSFSNIT 1034
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,031
Number of Sequences: 5004
Number of extensions: 62281
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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