Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00245
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    33   0.004
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 49  TLDVSYNMLIEFNLNNTQISSLTKLLLNNNFIKTISDRTLLGLTSLKEIIVTHNKIEHFS 228
           TLD S+N + E +  +    S+  L +NNN+I  +   T     +L  + +  N IE   
Sbjct: 599 TLDASHNRITELSPLSVP-DSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETME 657

Query: 229 DNSLL 243
             SLL
Sbjct: 658 LTSLL 662



 Score = 30.3 bits (65), Expect = 0.020
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +3

Query: 255 LNFLDISFNDKLAFNANIVKSSMYLNKLIISG-LEPNISLIGLGN-SSVAILDISCSKIT 428
           L+ L++S N      A +      LN+L +SG    +I  +   N S +  LD+S +++T
Sbjct: 385 LHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELT 444

Query: 429 NVQKLHLNELKRLDDLKLYKNNIIKLESERFR 524
           +V    L +L  L  L L +N I    +  FR
Sbjct: 445 SVPDA-LRDLALLKTLDLGENRISNFYNGSFR 475



 Score = 27.1 bits (57), Expect = 0.19
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +1

Query: 109 SLTKLLLNNNFIKTISDRTLLGLTSLKEIIVTHNKIEHFSDNSLLDQMDSIF 264
           +L  L ++ NFI+++ +   +  + +K +  +HN+I   S  S+ D ++ +F
Sbjct: 572 NLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLF 623



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 518 FSDLKSMRFLDLSYNKISYIQPGVFKD 598
           F  L  +  L+LSYN +++I   +FKD
Sbjct: 331 FLGLIRLIVLNLSYNMLTHIDARMFKD 357



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 515 AFSDLKSMRFLDLSYNKISYIQPGVFKD 598
           A  DL  ++ LDL  N+IS    G F++
Sbjct: 449 ALRDLALLKTLDLGENRISNFYNGSFRN 476



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 512 GAFSDLKSMRFLDLSYNKISYIQPGVF 592
           G F+  + +R + L+YN +  +  G+F
Sbjct: 279 GLFASTRDLREIHLAYNGLRDLPKGIF 305



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 663 FSGLVYLSSLDVSYNDLDDLKGERFYQL 746
           F GL+ L  L++SYN L  +    F  L
Sbjct: 331 FLGLIRLIVLNLSYNMLTHIDARMFKDL 358



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 518 FSDLKSMRFLDLSYNKISYIQPGVF 592
           F DL  ++ LDL  N I  I+   F
Sbjct: 355 FKDLFFLQILDLRNNSIDRIESNAF 379


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 82  FNLNNTQISSLTKLLLNNNFIKTI 153
           +N NN   ++  KL  N N+I+ I
Sbjct: 104 YNYNNNNYNNYKKLYYNINYIEQI 127


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 403 RIATDEFPRPINDILGSKPEIISLFKYMD 317
           R   DEFP+P + ++ +   +    KY D
Sbjct: 271 RDVLDEFPQPKHMLIEAYTNLSMTMKYYD 299


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 403 RIATDEFPRPINDILGSKPEIISLFKYMD 317
           R   DEFP+P + ++ +   +    KY D
Sbjct: 271 RDVLDEFPQPKHMLIEAYTNLSMTMKYYD 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,967
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)