Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00243
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 76 4e-15
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 76 5e-15
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.59
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 28 1.4
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 3.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 4.2
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 4.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 4.2
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 25 9.6
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.6
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 9.6
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 76.2 bits (179), Expect = 4e-15
Identities = 37/53 (69%), Positives = 41/53 (77%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 102
Q VRGIS KLQEEERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 62 QRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 75.8 bits (178), Expect = 5e-15
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++
Sbjct: 62 QRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLA 120
Query: 80 PATQ 69
PA Q
Sbjct: 121 PAPQ 124
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 426 PRTGAPPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSD 256
P + APPA G P V S + P GPS PS++ P+ P ++ V D
Sbjct: 218 PSSFAPPA-----GHAPNVTSESPKFPNRGPSIPSASVPPVPPSSYVLQQRPNRVDD 269
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 90 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 251
L+ NI+E +++ + +YF+ M + +FW I P +L KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 198 VTPLTLLFLKFDRDSSHLRCLRRLVPNSAPADLQEITACSYYWGKMDRYEAE 353
VTP TL FLK + + S L C+ A +L++I + W + E
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEPELEDIIVRTKLWNFRQSFTIE 86
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.4
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 411 PPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVP-NSARGVSD 256
PP RS+AAG+ PL + R P P S P S G Q P +S+R VS+
Sbjct: 341 PPPRSNAAGSIPLP-----PQGRSAPPPPPPRSAP-STGRQPPPLSSSRAVSN 387
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 254 SQVRGISIKLQEEERERRDNYVPEV 180
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 272 HEASQT-SQVRGISIKLQEEERERRDNYVPEVS 177
HE ++ S+ R S KL EEER+RR +V +++
Sbjct: 216 HERKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 126 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 239
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 225 KFDRDSSHLRCLRRLVPNSAPADLQEITACSYYW 326
+ D + + C+R+LV ++ D++E+T +W
Sbjct: 358 RLDAELYYTSCIRKLVIDNEIKDVEELTKIEPFW 391
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = -1
Query: 397 SRSRNVPSGLFSNNLSASYRSILPQ*YEQAVISWRSAGAEFGTRRLRHRKCEESLSN 227
+R+ + +FS+NL+ +L ++QA++ R + +H++ + S N
Sbjct: 406 TRNGKFNTSIFSSNLNPKVNELLQADFKQAILRKRKNESPEEVEPAKHQRTDTSTEN 462
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 345 EAERLLENKPEGTFLLRDSAQEEHLFSVS 431
+A + E+K E TF+ D AQE++ +S
Sbjct: 1058 DAHEMQESKNEETFVRNDVAQEDNFIELS 1086
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -2
Query: 426 PRTGAPPARSHAAGTCPL---VYSLTISRPRIG--PSCPSSTSRPL-SPGGQLVP 280
P +G PP AAG P+ + + +P +G P P ST+ P+ +P L P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 9.6
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Frame = -1
Query: 370 LFSNNL----SASYRSILPQ*YEQAVISWRSAGAEFGTRRLRHRKCEESLS-----NFRK 218
LF NNL SA++ S E + W+ GA R + E++S +FRK
Sbjct: 71 LFQNNLKKQLSAAFPSSDTMQLEDIIFRWQDGGAFLKVRYKEFPQDTEAVSEHVRESFRK 130
Query: 217 RSVRGV 200
R VR +
Sbjct: 131 RPVRTI 136
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 467 DARVQRAPVLAERHREQVLLLRGVTQQERAL 375
DAR+QR A R E+ LL+ ++ER L
Sbjct: 873 DARIQREKEKARRLAEEEALLKEKQERERQL 903
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 426 PRTGAPPARSHAAGTCPL-VYSLTISRPRIGPSCPSSTSRPLSPGGQ 289
P + PP G P + +L + + + GP+ PSS R SP +
Sbjct: 74 PHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNAK 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,773
Number of Sequences: 5004
Number of extensions: 40953
Number of successful extensions: 153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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