Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00243
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 63 2e-10
03_01_0066 - 537729-538163 63 2e-10
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 36 0.028
01_06_1756 - 39676340-39676615 30 1.9
07_01_0746 + 5714443-5714580,5715175-5715261,5715400-5715657,571... 29 2.5
10_05_0080 - 8907628-8908182 29 3.3
03_02_0943 + 12598616-12598789,12599790-12601250 29 3.3
06_01_0889 - 6807449-6809257 29 4.3
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758 29 4.3
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 28 5.7
09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303... 28 5.7
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 28 5.7
06_03_0029 - 15673494-15673871,15674193-15674375,15674425-156744... 28 5.7
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 28 5.7
05_01_0206 + 1487034-1489430 28 5.7
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 7.5
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 7.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 7.5
11_01_0734 - 6078023-6078203,6078645-6078866,6079323-6079390,607... 27 9.9
04_03_0508 + 16643416-16643530,16643939-16644094,16644244-166444... 27 9.9
>10_07_0174 + 13815478-13815903
Length = 141
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L ++ G++ Q
Sbjct: 62 QRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121
>03_01_0066 - 537729-538163
Length = 144
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L ++ G+ + Q
Sbjct: 62 QRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQ 120
Query: 80 P 78
P
Sbjct: 121 P 121
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 35.9 bits (79), Expect = 0.028
Identities = 22/51 (43%), Positives = 26/51 (50%)
Frame = -2
Query: 399 SHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSDIAS 247
SH +G PL L SRP P P + SRPL P VP + VSD +S
Sbjct: 396 SHRSGLPPLAAPLAPSRPPSPPPAPLAPSRPLLPSA--VPLCTKPVSDPSS 444
>01_06_1756 - 39676340-39676615
Length = 91
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 342 YEAERLLENKPEGTFLLRDSAQEEHLFSVSFRKYGRSLHARIEHYRHRFSFD 497
Y +E + P G FL R Q++H+ +F++ RS R H+ H D
Sbjct: 9 YCSEEVRSVTPTGGFLGRGGVQQQHVVKETFQEIDRSGSGR-HHHNHNHGND 59
>07_01_0746 +
5714443-5714580,5715175-5715261,5715400-5715657,
5715765-5715929,5716106-5716159,5716318-5716464,
5716735-5717112
Length = 408
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 372 PEGTFLLRDSAQEEHLFSVSFRKYGRSLHARI 467
PEGT +R + +++ L + S R+YGR H +
Sbjct: 114 PEGTVPIRRTKKDDLLRASSLRRYGRKRHTAV 145
>10_05_0080 - 8907628-8908182
Length = 184
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 336 PSCPSSTSRPLSPGGQLVPNS---ARGVSDIASARNLYQTSG 220
PSC S RP SP P++ ARG S +SAR+ + SG
Sbjct: 63 PSCNSQADRPASPSLIRSPSAWIRARGQSFASSARHARRRSG 104
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 230 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 114
K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 58 KEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>06_01_0889 - 6807449-6809257
Length = 602
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 314 AGRYLLEVSW--CRIRHEASQTSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDP 144
AGR ++EV C R + Q R I ++ + R R + YVP+ HD+ E D
Sbjct: 468 AGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDK 527
Query: 143 D 141
+
Sbjct: 528 E 528
>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
Length = 415
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 420 TGAPPARSHAAGTCPLVYSLT-ISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSDIAS 247
T PP + A +C + YS++ P S ++T+ LSP +P V+++A+
Sbjct: 254 TARPPHPAAATSSCSVAYSMSPAMTPTSSSSTTTTTTHELSPAPAFLPILDSLVTELAA 312
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 342 YEAERLLENKPEGTFLLRDSAQEEHLFSVSFRKYGRSLHARIEHYRHRFSFDS 500
+EA + K +L DSA + ++ +S +Y AR + H F +DS
Sbjct: 367 HEATVSMTRKLISKMILSDSADKMSIWCMSQNQYETGPRARFSYSLHSFGYDS 419
>09_04_0465 +
17827224-17827997,17828711-17829024,17829949-17830397,
17830641-17830756
Length = 550
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 384 TCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVP 280
T L Y LTIS I P+ PS+T+R GG +P
Sbjct: 196 TLGLSYGLTISEAFISPAMPSTTAR---AGGVFLP 227
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 378 PLVYSLTISRPRIGPSCPSSTSRPLSPG 295
PL Y+ + P I PS PSS+S P PG
Sbjct: 101 PLPYADLAAPPAIPPSPPSSSSDPPPPG 128
>06_03_0029 -
15673494-15673871,15674193-15674375,15674425-15674478,
15674592-15674756,15676478-15676720,15676810-15676896,
15676995-15677225
Length = 446
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 363 ENKPEGTFLLRDSAQEEHLFSVSFRKYGR 449
E PEGT +R + +++ L + S R+YGR
Sbjct: 142 EECPEGTVAIRRTTEKDLLRASSLRRYGR 170
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -2
Query: 426 PRTGAPPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSDIAS 247
P PPA S A L S+T + P+ S PSSTS + +VP S + +S +S
Sbjct: 382 PTQVLPPAPSRAGSG--LGRSVTPATPKTASSSPSSTSIVVPETCPVVPASPKSLSRTSS 439
>05_01_0206 + 1487034-1489430
Length = 798
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 657 ETSTARASCWXGKGAARGSGVVSMGSKNMTQAGSL*CSM 541
ETST+ CW +G A +G ++ + GS C +
Sbjct: 154 ETSTSAVRCWGPRGGAVEAGFLNASVSALAAGGSRACGV 192
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/68 (35%), Positives = 29/68 (42%)
Frame = -1
Query: 379 PSGLFSNNLSASYRSILPQ*YEQAVISWRSAGAEFGTRRLRHRKCEESLSNFRKRSVRGV 200
P S+ S S PQ + QA AE R RK EESL+ KRS R V
Sbjct: 23 PPSTSSSQKSPSPSQPQPQPHAQAQ-RLHDLAAELEEERRLRRKAEESLAEAEKRSER-V 80
Query: 199 TTMSQKCL 176
++Q L
Sbjct: 81 KALAQNVL 88
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 239 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 117
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -2
Query: 426 PRTGAPPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSDIAS 247
P +G P+ + G P S P P PSS + P +PGG P++ S
Sbjct: 392 PASGTSPSTPGSGGYSP-------STPCSAPPSPSSGTSPTTPGGGYSPSTPCNAPPSPS 444
Query: 246 ARNLYQTSGRG 214
+ T G G
Sbjct: 445 SDTSPTTPGGG 455
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 417 GAPPARSHAAGTCPLVY--SLTISRPRIG--PSCPSSTSRPLSPGG 292
G PPA S +GT P S P IG P PSS + P +PGG
Sbjct: 309 GTPPAPS--SGTSPTTPGGSYYPPTPSIGDVPPSPSSDTSPTTPGG 352
>11_01_0734 -
6078023-6078203,6078645-6078866,6079323-6079390,
6079919-6079981,6095129-6095782
Length = 395
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 378 PLVYSLTISRPRIGPSCPSSTSRPLSP 298
P+V S+ ++ P P+ P+ST P +P
Sbjct: 185 PVVQSIPLNAPSAQPTAPASTPAPAAP 211
>04_03_0508 +
16643416-16643530,16643939-16644094,16644244-16644405,
16644964-16645121,16645241-16645294,16645950-16646105,
16646241-16646582
Length = 380
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 360 LENKPEGTFLLRDSAQEEHLFSVSFRKYGRSLHARIE 470
L+N+ EG L+ Q E + F K R LH I+
Sbjct: 52 LQNQAEGVHLVLADVQMEEMNGFEFLKVARELHKSIQ 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,640
Number of Sequences: 37544
Number of extensions: 327410
Number of successful extensions: 1155
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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