Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00243
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37681| Best HMM Match : SH2 (HMM E-Value=3.5e-11) 108 4e-24
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 73 2e-13
SB_30777| Best HMM Match : SH2 (HMM E-Value=4e-10) 48 9e-06
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22) 37 0.017
SB_48515| Best HMM Match : SH2 (HMM E-Value=3.1) 35 0.051
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3) 35 0.051
SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11) 30 1.4
SB_8390| Best HMM Match : SH2 (HMM E-Value=0.00091) 30 1.4
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.5
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13) 29 3.3
SB_57944| Best HMM Match : OmpH (HMM E-Value=6.6) 29 4.4
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 29 4.4
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07) 29 4.4
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 5.8
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 28 7.7
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 28 7.7
>SB_37681| Best HMM Match : SH2 (HMM E-Value=3.5e-11)
Length = 421
Score = 108 bits (259), Expect = 4e-24
Identities = 46/69 (66%), Positives = 60/69 (86%)
Frame = +3
Query: 291 DLQEITACSYYWGKMDRYEAERLLENKPEGTFLLRDSAQEEHLFSVSFRKYGRSLHARIE 470
DL EIT C +YWGK++R+EAER+L+ P+GTFLLRDSAQ ++LFSVSFR+Y R+ HARIE
Sbjct: 249 DLLEITNCPWYWGKINRFEAERVLDGLPDGTFLLRDSAQYQYLFSVSFRRYFRTYHARIE 308
Query: 471 HYRHRFSFD 497
++HR+SFD
Sbjct: 309 QWKHRYSFD 317
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 515 FAARTVTGLIEHYKDPACVMFFEPMLTTPLPRAAPFPXQQLARAVL 652
F ++T+ L++HY M++EP+L LPR P Q L RA +
Sbjct: 324 FCSKTLHELLQHYSQAEQCMYYEPLLLNALPRKNTLPLQHLCRATI 369
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = +3
Query: 288 ADLQEITACSYYWGKMDRYEAERLLENKPEGTFLLRDSAQEEHLFSVSFRKYGRSLHARI 467
+ L+ ++ C +YWG M EAE+ L N+P+G FL+RDS + HL SVSFR G + H R+
Sbjct: 335 SSLKTLSNCGWYWGPMSSKEAEKELYNQPDGCFLVRDSENDYHLLSVSFRSKGATCHTRL 394
Query: 468 EHYRHRFSF 494
+ + +FSF
Sbjct: 395 IYNKGKFSF 403
>SB_30777| Best HMM Match : SH2 (HMM E-Value=4e-10)
Length = 265
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 318 YYWGKMDRYEAERLLENKPEGTFLLRDSAQEEHLFSVSFRKYGRSLHARIEHYRHRFSFD 497
++WG M +AE++L +P+G+FL+RDS L VS R ++H R+ + F
Sbjct: 171 WFWGAMRYEDAEQVLAGRPDGSFLVRDSTNSFDLLVVSVRSQSTTIHVRVMYTNGCFHLS 230
Query: 498 SHD 506
D
Sbjct: 231 HGD 233
>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +3
Query: 270 VPNSAPADLQEITACSYYWGKMDRYEAER--LLENKPEGTFLLRDSAQEEHLFSVSFRKY 443
+P++ A + + +++GK+ R EAE+ L P+GTFL+RDS + FS+S R
Sbjct: 126 IPSNYVAPEMSVKSQDWFFGKIKRAEAEKKLLAPGNPKGTFLIRDSETQPGNFSLSVRDG 185
Query: 444 GRSLHARI 467
H RI
Sbjct: 186 DNVKHYRI 193
>SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 270 VPNSAPADLQEITACSYYWGKMDRYEAERLLENKPEGTFLLRDSAQEEHLFSVSFRKYGR 449
VP+S + + S+Y G++ R AE LL + G+FL+R+S S+S R R
Sbjct: 87 VPSSYIKPVNSLEKHSWYHGQISRNAAEYLLSSGINGSFLVRESESSPGQLSISLRYDER 146
Query: 450 SLHARI 467
H R+
Sbjct: 147 VYHYRV 152
>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
Length = 699
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +3
Query: 225 KFDRDSSHLRCLRRLVPNSAPADLQEITACSYYWGKMDRYEAERLLENKPEGTFLLRDSA 404
K +++ L+ ++ +P AP D + +Y G + R EAE LLE+ EG FL+R+S
Sbjct: 420 KAEKEKMSLKEVQNALPPQAPPD--SLVQKDWYHGPISRGEAELLLED--EGDFLVRESK 475
Query: 405 QEEHLFSVSFRKYGRSLH 458
+ + +S K ++ H
Sbjct: 476 SQPGQYVLSGIKDKQARH 493
>SB_48515| Best HMM Match : SH2 (HMM E-Value=3.1)
Length = 40
Score = 35.1 bits (77), Expect = 0.051
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 327 GKMDRYEAERLLENKPEGTFLLRDSAQEEHLFSVS 431
GKMDR EAE+ + +GTFL+R+SA +++S
Sbjct: 4 GKMDRTEAEQETMGRSDGTFLVRESANRAGEYALS 38
>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
Length = 169
Score = 35.1 bits (77), Expect = 0.051
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 411 PPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVPNSAR 268
PP RS +G +++S + RP G S P S SRP P P+ +R
Sbjct: 2 PPPRSSLSGLEHILHSRAVKRPGDGRSRPPSESRPRPPYDDRPPSESR 49
>SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)
Length = 314
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 278 IRHEASQTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDT 138
+RH ++ +Q +++K + EERER PE+ L ++ VDP T
Sbjct: 7 VRHGSNDKTQSIIVAMKSRMEERER---LKPEIFQLIREVFRVDPKT 50
>SB_8390| Best HMM Match : SH2 (HMM E-Value=0.00091)
Length = 396
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 297 QEITACSYYWGKMDRYEAERLLENKPEGTFLLRDS 401
+E S++ G MD E+ERLL + G FL+R S
Sbjct: 323 KEAHCTSWFAGHMDETESERLLRDLSPGHFLIRFS 357
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 300 EITACSYYWGKMDRYEAERLLE--NKPEGTFLLRDS-AQEEHLFSV 428
+I +Y+G M+ EAE LLE GTF+L D A +E+ +V
Sbjct: 2940 KIEHAPWYYGNMNTTEAEELLEVHALQPGTFILHDGIATDEYTLTV 2985
>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
Length = 274
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 318 YYWGKMDRYEAERLLENKPE---GTFLLRDSAQEEHLFSVSFRKYGRSLHARI 467
++ G + R EA +L+ + G FL+R S + ++F GR+ H R+
Sbjct: 109 WFHGTLSRIEASQLVSQGSQQWHGIFLIRQSETRRGEYVLTFNYQGRAKHLRL 161
>SB_57944| Best HMM Match : OmpH (HMM E-Value=6.6)
Length = 416
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Frame = +3
Query: 69 LGSWLC*LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD--- 239
LGS + L +I+++ VGV+ + + H + V LL +K D
Sbjct: 13 LGSLVGGLSITDILDLNQETFEEAVGVWGKQMNIDLEHLKALAVKA-KLLLVKGDPSKFT 71
Query: 240 SSHLRCLRRLVPNSAPADLQEITA----CSYYWGKMDRYEAERLLENKPE-GTFLLRDSA 404
+ HL+ L R+V P+DL+++T GK + E+L KP+ FL ++
Sbjct: 72 AEHLKKLGRVVLGLEPSDLEKLTLENIDAVAALGKWRGWTVEQLENLKPKVRAFLANNNV 131
Query: 405 QEEHLF 422
+ E ++
Sbjct: 132 KIEDIY 137
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 360 TISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSD 256
T+ GPS P++ S P +P VP+ G SD
Sbjct: 440 TVPSDPTGPSDPTAPSDPTAPSDPTVPSDPTGQSD 474
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 411 PPARSHAAGTC-PLVYS-LTISRPRIGPSCPSSTSRPLSPGGQLVPNSARGVSD 256
P +S G P V+S T GPS P++ S P P VP+ G SD
Sbjct: 469 PTGQSDPTGRSDPTVHSDPTAPSDPTGPSDPTAPSDPTGPNDPTVPSDPTGPSD 522
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 339 GPSCPSSTSRPLSPGGQLVPNSARGVSD 256
GPS P++ S P +P VP+ G SD
Sbjct: 237 GPSDPTAPSDPTAPSDPTVPSDPTGPSD 264
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 339 GPSCPSSTSRPLSPGGQLVPNSARGVSD 256
GPS P++ S P +P VP+ G SD
Sbjct: 339 GPSDPTAPSDPTAPSDPTVPSDPTGPSD 366
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 339 GPSCPSSTSRPLSPGGQLVPNSARGVSD 256
GPS P++ S P +P VP+ G SD
Sbjct: 369 GPSDPTAPSDPTAPSDPTVPSDPTGQSD 396
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 351 RPRIGPSCPSSTSRPLSP 298
RP PSC S+T RPL+P
Sbjct: 91 RPHTPPSCQSNTPRPLTP 108
>SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)
Length = 324
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 315 SYYWGKMDRYEAERLLENKPEGTFLLRDSAQEEH 416
SY W M+ E +EN P+G +LL H
Sbjct: 218 SYIWLPMEDLSTESRIENLPQGVYLLHGLLNNGH 251
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 454 SERPYLRNDTENRCSSCAESRSRN-VPSGLFSNNLSASYRSIL 329
SER LR D+E R +SRN VPSG F S RS+L
Sbjct: 1555 SERKPLR-DSERRAPDSGYEQSRNDVPSGNFDKRESQYTRSLL 1596
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 102 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 206
N+ ++ +H++ G D M E++HF W++V P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 433 NDTENRCSSCAESRSRNVPSGLFSNNLSASY 341
N T CS C+E+ RN+P + + S S+
Sbjct: 38 NTTSPACSRCSENLGRNIPLAILDHWESTSF 68
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 426 PRTGAPPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPG---GQLVPNSARGVSD 256
PR + PA+ HA G P + ++S + + + L+PG QL P+ + V+D
Sbjct: 1166 PRRQSAPAKVHAEGAAPTPAAHSMSGEKSDHTALKAGLSALAPGEKFAQLFPDGLKPVTD 1225
>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 433 NDTENRCSSCAESRSRNVPSGLFSNNLSASYRSILP 326
N T N C ++S+NVP G N L+ ++ ++P
Sbjct: 663 NGTRNLCVRSQYTQSKNVPIGEEINALNGTHNLVIP 698
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 339 GPSCPSSTSRPLSPGGQLVPNSARGVS 259
GP+ P S P P G VPN +G S
Sbjct: 65 GPNGPQGPSGPQGPSGPQVPNGPQGPS 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,819
Number of Sequences: 59808
Number of extensions: 336016
Number of successful extensions: 1317
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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