Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00243
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 64 6e-11
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 63 1e-10
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 63 1e-10
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 62 3e-10
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 61 6e-10
At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low s... 31 0.67
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 1.2
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 29 2.1
At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) / tra... 29 2.1
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 3.6
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 3.6
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 29 3.6
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 28 4.8
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 28 4.8
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 8.3
At1g23340.2 68414.m02919 expressed protein similar to At1g70550... 27 8.3
At1g23340.1 68414.m02918 expressed protein similar to At1g70550... 27 8.3
At1g17040.1 68414.m02071 transcription factor-related contains P... 27 8.3
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/61 (49%), Positives = 44/61 (72%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ +G+ +
Sbjct: 62 QKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVE 121
Query: 80 P 78
P
Sbjct: 122 P 122
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/61 (49%), Positives = 43/61 (70%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +
Sbjct: 62 QKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVE 121
Query: 80 P 78
P
Sbjct: 122 P 122
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/61 (49%), Positives = 43/61 (70%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +
Sbjct: 62 QKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVE 121
Query: 80 P 78
P
Sbjct: 122 P 122
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 81
Q VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+
Sbjct: 62 QKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVD 121
Query: 80 P 78
P
Sbjct: 122 P 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = -3
Query: 260 QTSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 93
Q VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML L ++I G+
Sbjct: 62 QKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117
>At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low
similarity to nuclear protein np95 [Mus musculus]
GI:4220590; contains Pfam profile PF02182: YDG/SRA
domain
Length = 328
Score = 31.1 bits (67), Expect = 0.67
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 363 ENKPEGTFLLRDSAQEEHLFS 425
E KPEGT L R+SA ++H+F+
Sbjct: 53 EAKPEGTCLKRESADQDHIFA 73
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 414 APPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQLVP 280
+PP+ + G+ P S T S P P PS+ P+SPG P
Sbjct: 535 SPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPP 579
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 231 DRDSSHLRCLRRLVPNSAPADLQEITA 311
DR +SHL LR+LVPNS D + A
Sbjct: 76 DRINSHLTALRKLVPNSDKLDKAALLA 102
>At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) /
transcription factor E2Fc (E2Fc) identical to
transcription factor E2Fc [Arabidopsis thaliana]
GI:19578311; contains Pfam profile PF02319:
Transcription factor E2F/dimerisation partner; identical
to cDNA E2F transcription factor-2 E2F2 GI:10443850
Length = 396
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 375 LVYSLTISRPRIGPSCPSSTSRPLSPGGQLVPNS 274
L+ S++ S PR PSST+RP S Q +PNS
Sbjct: 25 LLQSISSSDPRYSSLTPSSTNRPFSV-SQSLPNS 57
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 79 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 186
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 79 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 186
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 423 RTGAPPARSHAAGTCPLVYSLTISRPRIGPSC-PSSTSRPLSPGGQLVPNSA 271
R G PP S AG ++ ++RP PS PS SRP PGG + +A
Sbjct: 96 RPGGPPPVSQPAG---FQSNVPLNRPTGPPSRQPSFGSRPSMPGGPVAQPAA 144
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 417 GAPPARSHAAGTCPLVYSLTISRPRIGPSCPSSTSRPLSPGGQL 286
G P R++ A + V S S + PSS SRPL+PG QL
Sbjct: 4872 GGPVQRTNMARS---VSSYISSSSTSTATAPSSDSRPLTPGSQL 4912
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 251 QVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 126
+ + I LQ+ +E RR YVP+ S + HD +E D +DML
Sbjct: 678 EAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 233 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 141
+K EEE R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538
>At1g23340.2 68414.m02919 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 363 ENKPEGTFLLRDSAQEEHLFSVSFRKYGRSL 455
E+ PEGT +R + +++ L + S R++GR +
Sbjct: 119 ESCPEGTIPIRRTTEQDMLRANSVRRFGRKI 149
>At1g23340.1 68414.m02918 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 363 ENKPEGTFLLRDSAQEEHLFSVSFRKYGRSL 455
E+ PEGT +R + +++ L + S R++GR +
Sbjct: 119 ESCPEGTIPIRRTTEQDMLRANSVRRFGRKI 149
>At1g17040.1 68414.m02071 transcription factor-related contains Pfam
profile: PF00017 Src homology domain 2; similar to
transcription factor [Danio rerio] (GI:3687402)
Length = 641
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 327 GKMDRYEAERLLENKPEGTFLLR 395
G + + EAER L+N+ GTF+LR
Sbjct: 550 GFVTKEEAERSLQNQVPGTFILR 572
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,165,842
Number of Sequences: 28952
Number of extensions: 230189
Number of successful extensions: 828
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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