Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00241
(753 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O60832 Cluster: H/ACA ribonucleoprotein complex subunit... 153 3e-36
UniRef50_Q10KT9 Cluster: H/ACA ribonucleoprotein complex subunit... 152 1e-35
UniRef50_O13473 Cluster: Centromere/microtubule-binding protein ... 134 3e-30
UniRef50_Q7QR24 Cluster: GLP_576_9913_8648; n=1; Giardia lamblia... 108 1e-22
UniRef50_UPI00015BB216 Cluster: putative rRNA pseudouridine synt... 77 5e-13
UniRef50_Q8PV20 Cluster: Probable tRNA pseudouridine synthase B;... 77 6e-13
UniRef50_Q9YDC3 Cluster: Probable tRNA pseudouridine synthase B;... 76 8e-13
UniRef50_Q57612 Cluster: Probable tRNA pseudouridine synthase B;... 75 1e-12
UniRef50_Q980C2 Cluster: TRNA pseudouridine synthase subunit A; ... 72 1e-11
UniRef50_A3MS77 Cluster: Pseudouridylate synthase; n=2; Thermopr... 71 2e-11
UniRef50_P60346 Cluster: Probable tRNA pseudouridine synthase B;... 68 2e-10
UniRef50_A0RUE0 Cluster: Pseudouridine synthase; n=2; Thermoprot... 64 4e-09
UniRef50_Q18GM5 Cluster: TRNA-pseudouridine synthase; n=1; Haloq... 61 2e-08
UniRef50_Q1VK38 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_Q9HIT4 Cluster: Probable tRNA pseudouridine synthase B;... 56 9e-07
UniRef50_Q2R1N7 Cluster: Kinetochore protein, putative; n=1; Ory... 55 2e-06
UniRef50_Q5UXH1 Cluster: Probable tRNA pseudouridine synthase B;... 53 9e-06
UniRef50_A1AMM4 Cluster: TRNA pseudouridine synthase B; n=2; Des... 52 1e-05
UniRef50_Q6L1A0 Cluster: Probable tRNA pseudouridine synthase B;... 52 2e-05
UniRef50_Q2FRP0 Cluster: Pseudouridylate synthase; n=1; Methanos... 51 4e-05
UniRef50_Q2RJM2 Cluster: tRNA pseudouridine synthase B; n=1; Moo... 51 4e-05
UniRef50_Q0JAU9 Cluster: Os04g0576400 protein; n=1; Oryza sativa... 50 5e-05
UniRef50_Q6MMS4 Cluster: tRNA pseudouridine synthase B; n=1; Bde... 50 5e-05
UniRef50_A5D2S3 Cluster: Pseudouridine synthase; n=1; Pelotomacu... 50 6e-05
UniRef50_A3CSX1 Cluster: Pseudouridylate synthase; n=2; Methanom... 50 6e-05
UniRef50_Q46JB9 Cluster: tRNA pseudouridine synthase B; n=2; Pro... 50 6e-05
UniRef50_A5UZQ6 Cluster: tRNA pseudouridine synthase B; n=4; Chl... 50 8e-05
UniRef50_Q8GB99 Cluster: tRNA pseudouridine synthase B; n=1; Hel... 50 8e-05
UniRef50_Q89AF6 Cluster: tRNA pseudouridine synthase B; n=1; Buc... 49 1e-04
UniRef50_A7BD72 Cluster: Putative uncharacterized protein; n=1; ... 49 1e-04
UniRef50_P59881 Cluster: tRNA pseudouridine synthase B; n=12; Cy... 49 1e-04
UniRef50_Q8FPB3 Cluster: tRNA pseudouridine synthase B; n=5; Cor... 49 1e-04
UniRef50_A7H9F6 Cluster: tRNA pseudouridine synthase B; n=2; Ana... 48 2e-04
UniRef50_A6GK85 Cluster: TruB; n=1; Plesiocystis pacifica SIR-1|... 48 2e-04
UniRef50_Q3ABA1 Cluster: tRNA pseudouridine synthase B; n=1; Car... 48 2e-04
UniRef50_Q01SZ5 Cluster: TRNA pseudouridine synthase B; n=1; Sol... 48 3e-04
UniRef50_Q67P83 Cluster: tRNA pseudouridine synthase B; n=3; Bac... 48 3e-04
UniRef50_P60344 Cluster: tRNA pseudouridine synthase B; n=5; Geo... 48 3e-04
UniRef50_Q2AIH0 Cluster: TRNA pseudouridine synthase B; n=1; Hal... 47 4e-04
UniRef50_A4J5W9 Cluster: TRNA pseudouridine synthase B; n=1; Des... 47 4e-04
UniRef50_Q8RA40 Cluster: tRNA pseudouridine synthase B; n=3; The... 47 4e-04
UniRef50_Q7MBB8 Cluster: tRNA pseudouridine synthase B; n=5; Cya... 47 4e-04
UniRef50_Q18BH7 Cluster: TRNA pseudouridine synthase B; n=2; Clo... 47 6e-04
UniRef50_Q9WZW0 Cluster: tRNA pseudouridine synthase B; n=6; The... 47 6e-04
UniRef50_P74696 Cluster: tRNA pseudouridine synthase B; n=2; Chr... 47 6e-04
UniRef50_Q1EWM9 Cluster: TRNA pseudouridine synthase B; n=2; Clo... 46 8e-04
UniRef50_A6C3H8 Cluster: tRNA pseudouridine synthase B; n=1; Pla... 46 8e-04
UniRef50_A4M809 Cluster: TRNA pseudouridine synthase B; n=1; Pet... 46 8e-04
UniRef50_A7D2R6 Cluster: Pseudouridylate synthase TruB domain pr... 46 8e-04
UniRef50_A7I5M0 Cluster: Pseudouridylate synthase; n=1; Candidat... 46 0.001
UniRef50_A7CZD5 Cluster: tRNA pseudouridine synthase B; n=1; Opi... 46 0.001
UniRef50_P59884 Cluster: tRNA pseudouridine synthase B; n=1; Syn... 46 0.001
UniRef50_Q3A4A3 Cluster: tRNA pseudouridine synthase B; n=2; Des... 46 0.001
UniRef50_Q0LD35 Cluster: TRNA pseudouridine synthase B; n=1; Her... 45 0.002
UniRef50_A1HSB7 Cluster: TRNA pseudouridine synthase B; n=1; The... 45 0.002
UniRef50_Q319E0 Cluster: tRNA pseudouridine synthase B; n=6; Pro... 45 0.002
UniRef50_Q9Z5I4 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 45 0.002
UniRef50_Q5PAY2 Cluster: tRNA pseudouridine synthase B; n=7; Ana... 45 0.002
UniRef50_A1A0A4 Cluster: TRNA pseudouridine synthase B; n=2; Bif... 45 0.002
UniRef50_P59880 Cluster: tRNA pseudouridine synthase B; n=2; Pro... 45 0.002
UniRef50_Q2J732 Cluster: TRNA pseudouridine synthase B; n=5; Act... 44 0.003
UniRef50_A6DGZ3 Cluster: tRNA pseudouridine synthase B; n=1; Len... 44 0.003
UniRef50_A3CMF2 Cluster: TRNA pseudouridine synthase B, putative... 44 0.003
UniRef50_Q6YQY6 Cluster: tRNA pseudouridine synthase B; n=4; Can... 44 0.003
UniRef50_Q9KA80 Cluster: tRNA pseudouridine synthase B; n=39; Ba... 44 0.003
UniRef50_UPI000050FC6C Cluster: COG0130: Pseudouridine synthase;... 44 0.004
UniRef50_Q41BZ2 Cluster: TRNA pseudouridine synthase B; n=1; Exi... 44 0.004
UniRef50_Q1NKV8 Cluster: TRNA pseudouridine synthase B; n=2; del... 44 0.004
UniRef50_Q190V0 Cluster: TRNA pseudouridine synthase B; n=2; Des... 44 0.004
UniRef50_Q0C5Z2 Cluster: TRNA pseudouridine synthase B; n=1; Hyp... 44 0.004
UniRef50_Q8XJS1 Cluster: tRNA pseudouridine synthase B; n=12; Cl... 44 0.004
UniRef50_Q6G5F5 Cluster: tRNA pseudouridine synthase B; n=2; Bar... 44 0.004
UniRef50_Q8YWR1 Cluster: tRNA pseudouridine synthase B; n=8; Cya... 44 0.004
UniRef50_UPI0000E87C37 Cluster: tRNA pseudouridine synthase B; n... 43 0.007
UniRef50_A6GNL1 Cluster: tRNA pseudouridine synthase B; n=1; Lim... 43 0.007
UniRef50_A5ZAJ6 Cluster: Putative uncharacterized protein; n=1; ... 43 0.007
UniRef50_A4XL67 Cluster: TRNA pseudouridine synthase B; n=1; Cal... 43 0.007
UniRef50_Q6AJY7 Cluster: tRNA pseudouridine synthase B; n=1; Des... 43 0.007
UniRef50_P32732 Cluster: tRNA pseudouridine synthase B; n=19; Ba... 43 0.007
UniRef50_Q2LWU1 Cluster: TRNA pseudouridine synthase B; n=1; Syn... 43 0.009
UniRef50_Q21H63 Cluster: TRNA pseudouridine synthase B; n=3; Gam... 43 0.009
UniRef50_A0LHM2 Cluster: TRNA pseudouridine synthase B; n=1; Syn... 43 0.009
UniRef50_Q6F1I4 Cluster: tRNA pseudouridine synthase B; n=3; Mol... 43 0.009
UniRef50_O66922 Cluster: tRNA pseudouridine synthase B; n=1; Aqu... 43 0.009
UniRef50_Q1MZS4 Cluster: TRNA pseudouridine synthase B; n=1; Oce... 42 0.012
UniRef50_A6PMJ9 Cluster: tRNA pseudouridine synthase B; n=1; Vic... 42 0.012
UniRef50_Q5LLT4 Cluster: tRNA pseudouridine synthase B; n=26; Al... 42 0.012
UniRef50_Q8R5X8 Cluster: tRNA pseudouridine synthase B; n=3; Fus... 42 0.012
UniRef50_Q04ED7 Cluster: Pseudouridine synthase; n=1; Oenococcus... 42 0.016
UniRef50_A3ER78 Cluster: Putative pseudouridine synthase; n=1; L... 42 0.016
UniRef50_Q5YSE0 Cluster: tRNA pseudouridine synthase B; n=31; Ac... 42 0.016
UniRef50_Q9CGH0 Cluster: tRNA pseudouridine synthase B; n=3; Lac... 42 0.016
UniRef50_Q5FJN8 Cluster: tRNA pseudouridine synthase B; n=5; Lac... 42 0.016
UniRef50_Q1IPJ6 Cluster: TRNA pseudouridine synthase B; n=1; Aci... 42 0.022
UniRef50_Q14NU4 Cluster: Putative trna pseudouridine synthase b ... 42 0.022
UniRef50_A4E6U4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.022
UniRef50_Q8CXQ2 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 42 0.022
UniRef50_Q3ZXU5 Cluster: tRNA pseudouridine synthase B; n=3; Deh... 42 0.022
UniRef50_Q8CY45 Cluster: tRNA pseudouridine synthase B; n=2; Bif... 42 0.022
UniRef50_Q9PQD7 Cluster: tRNA pseudouridine synthase B; n=1; Ure... 41 0.029
UniRef50_A0UY57 Cluster: TRNA pseudouridine synthase B; n=2; Clo... 41 0.038
UniRef50_Q18NV1 Cluster: Cbf5; n=2; Desulfurococcaceae|Rep: Cbf5... 41 0.038
UniRef50_Q8K9H3 Cluster: tRNA pseudouridine synthase B; n=2; Buc... 41 0.038
UniRef50_Q0AYI5 Cluster: Pseudouridylate synthase; n=1; Syntroph... 40 0.050
UniRef50_Q72GS9 Cluster: tRNA pseudouridine synthase B; n=2; The... 40 0.050
UniRef50_P60345 Cluster: tRNA pseudouridine synthase B; n=37; Al... 40 0.050
UniRef50_Q9RUQ9 Cluster: tRNA pseudouridine synthase B; n=2; Dei... 40 0.050
UniRef50_Q1VKI1 Cluster: TRNA pseudouridine synthase B; n=1; Psy... 40 0.066
UniRef50_A3WPV5 Cluster: TRNA pseudouridine 5S synthase; n=1; Id... 40 0.066
UniRef50_Q2RMR8 Cluster: tRNA pseudouridine synthase B; n=7; Alp... 40 0.066
UniRef50_Q39H28 Cluster: tRNA pseudouridine synthase B; n=55; Pr... 40 0.066
UniRef50_Q1LSL0 Cluster: TRNA pseudouridine synthase B; n=1; Bau... 40 0.087
UniRef50_Q03WH8 Cluster: Pseudouridine synthase; n=1; Leuconosto... 40 0.087
UniRef50_A5CSY9 Cluster: TRNA pseudouridine synthase B; n=2; Act... 40 0.087
UniRef50_A4A2R8 Cluster: TRNA pseudouridine synthase B; n=1; Bla... 40 0.087
UniRef50_A1ICX4 Cluster: Pseudouridylate synthase; n=1; Candidat... 40 0.087
UniRef50_Q8D2X8 Cluster: tRNA pseudouridine synthase B; n=1; Wig... 40 0.087
UniRef50_Q4FVL3 Cluster: tRNA pseudouridine synthase B; n=3; Psy... 40 0.087
UniRef50_Q1GXD4 Cluster: TRNA pseudouridine synthase B; n=1; Met... 39 0.12
UniRef50_Q8ZBC4 Cluster: tRNA pseudouridine synthase B; n=129; G... 39 0.12
UniRef50_O84096 Cluster: tRNA pseudouridine synthase B; n=9; Chl... 39 0.12
UniRef50_Q1FIZ5 Cluster: TRNA pseudouridine synthase B; n=5; Clo... 39 0.15
UniRef50_A4GHL8 Cluster: TRNA pseudouridine synthase B; n=3; Bac... 39 0.15
UniRef50_Q0WVR7 Cluster: TRNA synthase-like protein; n=7; Eukary... 39 0.15
UniRef50_Q9PGR1 Cluster: tRNA pseudouridine synthase B; n=12; Xa... 39 0.15
UniRef50_Q88VL5 Cluster: tRNA pseudouridine synthase B; n=4; Lac... 39 0.15
UniRef50_A6NTY4 Cluster: Putative uncharacterized protein; n=1; ... 38 0.20
UniRef50_A1U5Z8 Cluster: TRNA pseudouridine synthase B; n=4; Gam... 38 0.20
UniRef50_Q8Y7F3 Cluster: tRNA pseudouridine synthase B; n=31; Ba... 38 0.20
UniRef50_Q5FQM1 Cluster: tRNA pseudouridine synthase B; n=1; Glu... 38 0.20
UniRef50_Q4ULJ9 Cluster: tRNA pseudouridine synthase B; n=12; Ri... 38 0.27
UniRef50_Q3KI82 Cluster: tRNA pseudouridine synthase B; n=9; Gam... 38 0.27
UniRef50_Q38W87 Cluster: tRNA pseudouridine synthase B; n=3; Lac... 38 0.27
UniRef50_Q1VNK7 Cluster: TRNA pseudouridine synthase B; n=1; Psy... 38 0.35
UniRef50_Q057K1 Cluster: TRNA pseudouridine 55 synthetase; n=1; ... 38 0.35
UniRef50_Q820P2 Cluster: tRNA pseudouridine synthase B; n=3; Nit... 38 0.35
UniRef50_Q820Z5 Cluster: tRNA pseudouridine synthase B; n=2; Tro... 37 0.46
UniRef50_Q9JYY1 Cluster: tRNA pseudouridine synthase B; n=5; Bet... 37 0.46
UniRef50_P59879 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 37 0.46
UniRef50_A7PM10 Cluster: Chromosome chr14 scaffold_21, whole gen... 37 0.61
UniRef50_Q3J9B8 Cluster: tRNA pseudouridine synthase B; n=3; Gam... 37 0.61
UniRef50_Q5NER4 Cluster: tRNA pseudouridine synthase B; n=11; Fr... 37 0.61
UniRef50_A4BAM7 Cluster: TRNA pseudouridine synthase B; n=1; Rei... 36 0.81
UniRef50_A4S143 Cluster: Predicted protein; n=2; Ostreococcus|Re... 36 0.81
UniRef50_Q609C2 Cluster: tRNA pseudouridine synthase B; n=1; Met... 36 0.81
UniRef50_P59874 Cluster: tRNA pseudouridine synthase B; n=10; Pr... 36 0.81
UniRef50_Q30WI7 Cluster: tRNA pseudouridine synthase B; n=4; Des... 36 1.1
UniRef50_Q9ZA63 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_A0LE16 Cluster: TRNA pseudouridine synthase B; n=1; Mag... 36 1.4
UniRef50_Q31GK3 Cluster: tRNA pseudouridine synthase B; n=1; Thi... 36 1.4
UniRef50_Q2GEU5 Cluster: TRNA pseudouridine synthase B; n=1; Neo... 35 1.9
UniRef50_A5IY15 Cluster: TRNA pseudouridine synthase B; n=1; Myc... 35 1.9
UniRef50_A3VQI2 Cluster: TRNA pseudouridine synthase B; n=1; Par... 35 1.9
UniRef50_Q0HM19 Cluster: Periplasmic sensor signal transduction ... 35 2.5
UniRef50_Q6F7I5 Cluster: tRNA pseudouridine synthase B; n=6; Pro... 34 3.3
UniRef50_UPI0000E0F5A1 Cluster: tRNA pseudouridine synthase B; n... 34 4.3
UniRef50_A5EWY7 Cluster: TRNA pseudouridine synthase B; n=1; Dic... 34 4.3
UniRef50_P59877 Cluster: tRNA pseudouridine synthase B; n=2; Can... 34 4.3
UniRef50_Q2NBZ4 Cluster: TRNA pseudouridine synthase B; n=1; Ery... 33 5.7
UniRef50_O51743 Cluster: tRNA pseudouridine synthase B; n=3; Bor... 33 5.7
UniRef50_Q2BH44 Cluster: TRNA pseudouridine synthase B; n=1; Nep... 33 7.6
UniRef50_Q18NU4 Cluster: Cbf5; n=3; Sulfolobaceae|Rep: Cbf5 - Me... 33 7.6
UniRef50_A1STR8 Cluster: Putative uncharacterized protein precur... 33 10.0
UniRef50_A2FSF1 Cluster: MIZ zinc finger family protein; n=1; Tr... 33 10.0
UniRef50_Q5NQ30 Cluster: tRNA pseudouridine synthase B; n=6; Sph... 33 10.0
UniRef50_Q9PNJ2 Cluster: tRNA pseudouridine synthase B; n=17; Ca... 33 10.0
>UniRef50_O60832 Cluster: H/ACA ribonucleoprotein complex subunit 4;
n=78; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 4 - Homo sapiens (Human)
Length = 514
Score = 153 bits (372), Expect = 3e-36
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 6e-16
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>UniRef50_Q10KT9 Cluster: H/ACA ribonucleoprotein complex subunit 4,
putative, expressed; n=8; Oryza sativa|Rep: H/ACA
ribonucleoprotein complex subunit 4, putative, expressed
- Oryza sativa subsp. japonica (Rice)
Length = 591
Score = 152 bits (368), Expect = 1e-35
Identities = 65/82 (79%), Positives = 77/82 (93%)
Frame = +2
Query: 266 LDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVV 445
LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPSNPSSHEVV
Sbjct: 65 LDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVV 124
Query: 446 SWIKRILKVEKTGHSGTLDPKL 511
+WIKR+L+VEKTGHSGTLDPK+
Sbjct: 125 AWIKRLLRVEKTGHSGTLDPKV 146
Score = 81.4 bits (192), Expect = 2e-14
Identities = 41/77 (53%), Positives = 50/77 (64%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
K + K G ++TG LIVC+DRATRLVKSQQ AGKEYV V H+AV + +V
Sbjct: 128 KRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARV 187
Query: 634 TQGLEKLRGALFQRPRL 684
+ LE L GA+FQRP L
Sbjct: 188 ARALEALTGAVFQRPPL 204
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLISAVKRQLRVRT+Y+SKLL+ D
Sbjct: 203 PLISAVKRQLRVRTIYESKLLEHD 226
>UniRef50_O13473 Cluster: Centromere/microtubule-binding protein
CBF5; n=54; cellular organisms|Rep:
Centromere/microtubule-binding protein CBF5 -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 474
Score = 134 bits (323), Expect = 3e-30
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = +2
Query: 269 DTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVS 448
+T+ WPLLLK++D+L VR+ HYTP+P G SPLKR + Y+ SG IN+DKPSNPSSHEVV+
Sbjct: 17 NTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPSNPSSHEVVA 76
Query: 449 WIKRILKVEKTGHSGTLDPKL 511
WIKRIL+ EKTGHSGTLDPK+
Sbjct: 77 WIKRILRCEKTGHSGTLDPKV 97
Score = 89.0 bits (211), Expect = 1e-16
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
K + K G ++TGCLIVC+DRATRLVKSQQ AGKEYV + LH A+++ +++
Sbjct: 79 KRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDALKDEKEL 138
Query: 634 TQGLEKLRGALFQRPRL 684
+GLE L GALFQRP L
Sbjct: 139 GRGLENLTGALFQRPPL 155
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3
Query: 639 GLGEAAWSSIPEAPLISAVKRQLRVRTVYDSKLLDFD 749
GL + PLISAVKRQLRVRT+YDS L++FD
Sbjct: 141 GLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFD 177
>UniRef50_Q7QR24 Cluster: GLP_576_9913_8648; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_576_9913_8648 - Giardia lamblia ATCC
50803
Length = 421
Score = 108 bits (260), Expect = 1e-22
Identities = 49/79 (62%), Positives = 65/79 (82%)
Frame = +2
Query: 269 DTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVS 448
DT+ + LLL+ F++L+VR+ YTP G SPL+RPI +++K G IN+DK + PSSHEVV+
Sbjct: 8 DTSEFKLLLEGFNQLHVRSASYTPTQNGYSPLQRPIREHLKYGVINLDKTAGPSSHEVVA 67
Query: 449 WIKRILKVEKTGHSGTLDP 505
WI+RIL+VEKTGHSGTLDP
Sbjct: 68 WIRRILEVEKTGHSGTLDP 86
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +1
Query: 508 ITGCLIVCIDRATRLVKSQQNAGKEYVAV 594
+TGCL+VC+DRATRLVKSQQ GKEYV V
Sbjct: 88 VTGCLLVCLDRATRLVKSQQLMGKEYVCV 116
>UniRef50_UPI00015BB216 Cluster: putative rRNA pseudouridine
synthase; n=1; Ignicoccus hospitalis KIN4/I|Rep:
putative rRNA pseudouridine synthase - Ignicoccus
hospitalis KIN4/I
Length = 349
Score = 77.0 bits (181), Expect = 5e-13
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +2
Query: 317 VRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGT 496
+R T +G P KR + + V+ G +N+DKP P+SHEVV+WIKR+ +E+ GH GT
Sbjct: 23 IREEAETDPKYGKEPWKRDVKELVELGVVNLDKPPGPTSHEVVAWIKRMFGLERAGHGGT 82
Query: 497 LDPKLRVALSFA 532
LDPK+ L A
Sbjct: 83 LDPKVTGVLPVA 94
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TG L V + AT+++ +GKEYV V H AV+ ++V + L+ L G ++QRP L
Sbjct: 86 KVTGVLPVALAEATKVIHYVMLSGKEYVMVIQFHDAVKE-EEVIENLKYLVGEIYQRPPL 144
>UniRef50_Q8PV20 Cluster: Probable tRNA pseudouridine synthase B;
n=6; Euryarchaeota|Rep: Probable tRNA pseudouridine
synthase B - Methanosarcina mazei (Methanosarcina
frisia)
Length = 338
Score = 76.6 bits (180), Expect = 6e-13
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 320 RTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTL 499
++ +T +G P KRPI +Y++ G +N+DKP P+SHEV +W+K IL V GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 500 DPKL 511
DPK+
Sbjct: 78 DPKV 81
Score = 38.3 bits (85), Expect = 0.20
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 490 GHARS---EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRG 660
GHA S ++TG L + +AT V + + +GKEY+ LH A+ + V Q E+ G
Sbjct: 72 GHAGSLDPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAMPQ-KLVRQVCEEFTG 130
Query: 661 ALFQRP 678
++Q P
Sbjct: 131 PIYQMP 136
>UniRef50_Q9YDC3 Cluster: Probable tRNA pseudouridine synthase B;
n=24; Thermoprotei|Rep: Probable tRNA pseudouridine
synthase B - Aeropyrum pernix
Length = 354
Score = 76.2 bits (179), Expect = 8e-13
Identities = 36/78 (46%), Positives = 49/78 (62%)
Frame = +2
Query: 299 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEK 478
N R+ + + T +G P +RP+ Y++ G I VDKP P+SHEVV+WIKR+L V +
Sbjct: 25 NTSRILYKYDEPTDPRYGYLPHERPLDVYLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSR 84
Query: 479 TGHSGTLDPKLRVALSFA 532
GH GTLDPK+ L A
Sbjct: 85 AGHGGTLDPKVTGVLPVA 102
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TG L V ++R TR++ + ++ KEYV V LH VE ++ + L+ G ++Q+P L
Sbjct: 94 KVTGVLPVALERMTRIIGTVMHSSKEYVCVMQLHRPVEE-DRLREVLKLFEGEIYQKPPL 152
>UniRef50_Q57612 Cluster: Probable tRNA pseudouridine synthase B;
n=9; Euryarchaeota|Rep: Probable tRNA pseudouridine
synthase B - Methanococcus jannaschii
Length = 336
Score = 75.4 bits (177), Expect = 1e-12
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2
Query: 305 DRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTG 484
+ L V+ T +G +P +R I D +K G + VDKP P+SHEV +W+K+IL ++K G
Sbjct: 16 EELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAG 75
Query: 485 HSGTLDPKLRVALSFA 532
H GTLDPK+ L A
Sbjct: 76 HGGTLDPKVTGVLPVA 91
Score = 37.5 bits (83), Expect = 0.35
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TG L V ++RAT+ + KEYV + +LH + + + ++ G ++QRP L
Sbjct: 83 KVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASE-EDILRVFKEFTGRIYQRPPL 141
>UniRef50_Q980C2 Cluster: TRNA pseudouridine synthase subunit A;
n=2; Thermoprotei|Rep: TRNA pseudouridine synthase
subunit A - Sulfolobus solfataricus
Length = 89
Score = 72.1 bits (169), Expect = 1e-11
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +2
Query: 317 VRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGT 496
+R + T +G P KRPI ++K+ IN+DKP P+SHEV W+K++L V K GH GT
Sbjct: 22 IRKDSETSDKYGYYPEKRPIEIHIKNSIINLDKPPGPTSHEVAYWVKKMLNVTKAGHGGT 81
Query: 497 LDP 505
L+P
Sbjct: 82 LEP 84
>UniRef50_A3MS77 Cluster: Pseudouridylate synthase; n=2;
Thermoproteaceae|Rep: Pseudouridylate synthase -
Pyrobaculum calidifontis (strain JCM 11548 / VA1)
Length = 333
Score = 71.3 bits (167), Expect = 2e-11
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +2
Query: 317 VRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGT 496
V+ T +G P R ++++ F+ +DKP P+SHEV +W+K+IL VE+ GHSGT
Sbjct: 10 VKLEEGTNPQWGKPPSSRSAEEHIRYSFLILDKPRGPTSHEVAAWVKKILGVERAGHSGT 69
Query: 497 LDPKLRVALSFA 532
LDPK+ L A
Sbjct: 70 LDPKVSGVLPVA 81
Score = 33.9 bits (74), Expect = 4.3
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PL SAVKRQLR R VY +LL+ D
Sbjct: 130 PLRSAVKRQLRTRRVYSLELLELD 153
>UniRef50_P60346 Cluster: Probable tRNA pseudouridine synthase B;
n=12; Archaea|Rep: Probable tRNA pseudouridine synthase
B - Nanoarchaeum equitans
Length = 348
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = +2
Query: 347 FGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALS 526
+G P RPI +K IN+DKPS P+SH+VV+W++ I+ V K GH GTLDPK+ L
Sbjct: 43 WGEDPYNRPIERLLKYSVINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLP 101
Query: 527 FA 532
A
Sbjct: 102 IA 103
Score = 42.3 bits (95), Expect = 0.012
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TG L + I AT+++++ AGKEYVA+ +LH V + + + + K G + Q P L
Sbjct: 95 KVTGVLPIAIGEATKVLQTLLIAGKEYVALMHLHKEVSE-KDIIKVMSKFVGTIIQTPPL 153
>UniRef50_A0RUE0 Cluster: Pseudouridine synthase; n=2;
Thermoprotei|Rep: Pseudouridine synthase - Cenarchaeum
symbiosum
Length = 333
Score = 64.1 bits (149), Expect = 4e-09
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +2
Query: 365 KRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
KR + ++ G + +DKP P+SHE V+W KRIL++ K GHSGTLDP++
Sbjct: 27 KRSVEQLLEYGIVLLDKPPGPTSHEAVAWAKRILEIPKAGHSGTLDPQV 75
>UniRef50_Q18GM5 Cluster: TRNA-pseudouridine synthase; n=1;
Haloquadratum walsbyi DSM 16790|Rep: TRNA-pseudouridine
synthase - Haloquadratum walsbyi (strain DSM 16790)
Length = 339
Score = 61.3 bits (142), Expect = 2e-08
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +2
Query: 356 SPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
SP R ++D G +N+DKP PS+H+V +W++ ++ VE+ H+GTLDPK+
Sbjct: 10 SPDNRSLADICNFGVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKV 61
Score = 37.1 bits (82), Expect = 0.46
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRP 678
++TGCL + + ATRL KEY+AV H + ++ +E G ++Q+P
Sbjct: 60 KVTGCLPILLGEATRLAPVFLEGTKEYLAVLEFHGPPPS--DLSMIIETFEGTIYQKP 115
>UniRef50_Q1VK38 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 74
Score = 60.5 bits (140), Expect = 4e-08
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 347 FGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
FG P R + + SGFI VDKP+ P+SH++ +W + +L +++ GH GTLDP
Sbjct: 16 FGTVPDDRTLEQRLASGFILVDKPAGPTSHQLAAWARDLLGLDRLGHGGTLDP 68
>UniRef50_Q9HIT4 Cluster: Probable tRNA pseudouridine synthase B;
n=3; Thermoplasma|Rep: Probable tRNA pseudouridine
synthase B - Thermoplasma acidophilum
Length = 365
Score = 56.0 bits (129), Expect = 9e-07
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
+GF+ +DKP P+SH+V W++ IL +EK H GTLDP + L+ A
Sbjct: 7 NGFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMA 53
Score = 35.9 bits (79), Expect = 1.1
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 418 EQPQLPRSSFMD---KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYV 588
++PQ P S +D + K G +TG L + I +A RLV + KEYV
Sbjct: 13 DKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHESPKEYV 72
Query: 589 AVFNLHSAVENIQKVTQGLEKLRGALFQRP 678
V + + ++V +K G ++Q P
Sbjct: 73 GVMRFYEDITE-EEVRYYFKKFTGRIYQLP 101
>UniRef50_Q2R1N7 Cluster: Kinetochore protein, putative; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Kinetochore
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 142
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/54 (51%), Positives = 33/54 (61%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 615
K + K G ++TG LIVC+D ATRLVKSQQ AGKEY V H+AV
Sbjct: 64 KRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAV 117
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +2
Query: 440 VVSWIKRILKVEKTGHSGTLDPKL 511
VV+WIKR+L+V KTGHSGTLDPK+
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKV 82
>UniRef50_Q5UXH1 Cluster: Probable tRNA pseudouridine synthase B;
n=3; Halobacteriaceae|Rep: Probable tRNA pseudouridine
synthase B - Haloarcula marismortui (Halobacterium
marismortui)
Length = 314
Score = 52.8 bits (121), Expect = 9e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 338 PLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
P+ P +R + G +N+DKP PS+H+V +WI+ ++ H GTLDPK+
Sbjct: 18 PMTLRAPPDERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKV 75
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLH 606
++TGCL V + A R+ + NA KEYV V LH
Sbjct: 74 KVTGCLPVLLGDAARMAQVFDNAVKEYVTVLELH 107
>UniRef50_A1AMM4 Cluster: TRNA pseudouridine synthase B; n=2;
Desulfuromonadales|Rep: TRNA pseudouridine synthase B -
Pelobacter propionicus (strain DSM 2379)
Length = 304
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SGF +DKP+ SSH+VVS ++RIL + GH+GTLDP
Sbjct: 3 SGFFVIDKPAGISSHDVVSRVRRILGTRRVGHTGTLDP 40
>UniRef50_Q6L1A0 Cluster: Probable tRNA pseudouridine synthase B;
n=2; Thermoplasmatales|Rep: Probable tRNA pseudouridine
synthase B - Picrophilus torridus
Length = 349
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
+GFI VDKP P+SH++ SWI+ I + GH GTLDP + L A
Sbjct: 5 NGFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMA 51
>UniRef50_Q2FRP0 Cluster: Pseudouridylate synthase; n=1;
Methanospirillum hungatei JF-1|Rep: Pseudouridylate
synthase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 310
Score = 50.8 bits (116), Expect = 4e-05
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +2
Query: 389 KSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+ I +DKP PSSH+V +W++ I V GH+GTLDP
Sbjct: 15 QGSIILIDKPRGPSSHQVAAWVREITGVSSVGHTGTLDP 53
>UniRef50_Q2RJM2 Cluster: tRNA pseudouridine synthase B; n=1;
Moorella thermoacetica ATCC 39073|Rep: tRNA
pseudouridine synthase B - Moorella thermoacetica
(strain ATCC 39073)
Length = 305
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
GF+NV KP +SH+VV ++R+LKV++ GH GTLDP
Sbjct: 4 GFVNVLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDP 40
>UniRef50_Q0JAU9 Cluster: Os04g0576400 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os04g0576400 protein -
Oryza sativa subsp. japonica (Rice)
Length = 97
Score = 50.4 bits (115), Expect = 5e-05
Identities = 30/61 (49%), Positives = 33/61 (54%)
Frame = -2
Query: 671 WNRAPRSFSKPCVTF*IFSTAECKLKTATYSLPAFCCDLTSLVARSMQTIRQPVISDRAC 492
WN AP S S +A K T TYSLPA CCDLT VARS QT+R PV +
Sbjct: 6 WNMAPVSASSARAV-----SAAWKRATQTYSLPAPCCDLTRRVARSTQTMRLPVTLGSSV 60
Query: 491 P 489
P
Sbjct: 61 P 61
>UniRef50_Q6MMS4 Cluster: tRNA pseudouridine synthase B; n=1;
Bdellovibrio bacteriovorus|Rep: tRNA pseudouridine
synthase B - Bdellovibrio bacteriovorus
Length = 308
Score = 50.4 bits (115), Expect = 5e-05
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + VDKPS SSH+VV+ ++RIL GHSGTLDP
Sbjct: 8 NGLLLVDKPSGISSHDVVARLRRILSTRAVGHSGTLDP 45
>UniRef50_A5D2S3 Cluster: Pseudouridine synthase; n=1; Pelotomaculum
thermopropionicum SI|Rep: Pseudouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 316
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G +NV KP SSH+VV I+RI V+K GH+GTLDP
Sbjct: 2 NGIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDP 39
>UniRef50_A3CSX1 Cluster: Pseudouridylate synthase; n=2;
Methanomicrobiales|Rep: Pseudouridylate synthase -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 302
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 389 KSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+SG + VDKP PSSH+V +W+ IL + GH+GTLDP++
Sbjct: 10 ESGIVVVDKPRGPSSHQVAAWVGGILG-RRVGHAGTLDPQV 49
Score = 37.9 bits (84), Expect = 0.27
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 490 GHARS---EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRG 660
GHA + +++G LIV A RL + KEYV + LH + V Q ++ G
Sbjct: 40 GHAGTLDPQVSGVLIVMFGGAVRLAPVLLSHNKEYVCLMRLHGDASR-ESVEQAAKEFTG 98
Query: 661 ALFQRP 678
++QRP
Sbjct: 99 RIYQRP 104
>UniRef50_Q46JB9 Cluster: tRNA pseudouridine synthase B; n=2;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
B - Prochlorococcus marinus (strain NATL2A)
Length = 314
Score = 50.0 bits (114), Expect = 6e-05
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
GF+ +DKPS +SH+ V+ ++++ ++K GHSGTLDP + L A
Sbjct: 6 GFVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIA 51
>UniRef50_A5UZQ6 Cluster: tRNA pseudouridine synthase B; n=4;
Chloroflexaceae|Rep: tRNA pseudouridine synthase B -
Roseiflexus sp. RS-1
Length = 300
Score = 49.6 bits (113), Expect = 8e-05
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
GF+N+DKP+ +SH+VV+ I+R+ + GH+GTLDP
Sbjct: 3 GFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDP 39
>UniRef50_Q8GB99 Cluster: tRNA pseudouridine synthase B; n=1;
Heliobacillus mobilis|Rep: tRNA pseudouridine synthase B
- Heliobacillus mobilis
Length = 307
Score = 49.6 bits (113), Expect = 8e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2
Query: 356 SPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
+PLK P+ GF+N+ KP +SH+VV+ +RIL+ ++ GH GTLDP L A
Sbjct: 2 NPLKSPLE-----GFLNILKPPGMTSHDVVAKARRILREKRIGHMGTLDPDAAGVLPIA 55
>UniRef50_Q89AF6 Cluster: tRNA pseudouridine synthase B; n=1;
Buchnera aphidicola (Baizongia pistaciae)|Rep: tRNA
pseudouridine synthase B - Buchnera aphidicola subsp.
Baizongia pistaciae
Length = 302
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G I +DKP SSHE + +K ILK++K GH+GTLDP
Sbjct: 10 GIILIDKPYGLSSHETLQKVKGILKIKKMGHTGTLDP 46
>UniRef50_A7BD72 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 355
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +2
Query: 365 KRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+RP D + G + +DKP +SH+VVS ++R+ + K GH GTLDP
Sbjct: 8 RRP--DNPRPGLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDP 52
>UniRef50_P59881 Cluster: tRNA pseudouridine synthase B; n=12;
Cyanobacteria|Rep: tRNA pseudouridine synthase B -
Prochlorococcus marinus (strain MIT 9313)
Length = 320
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
V GF+ +DKP+ +SH+ VS ++R+ +++ GH GTLDP + L A
Sbjct: 3 VPFGFVVIDKPAGITSHDCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIA 51
>UniRef50_Q8FPB3 Cluster: tRNA pseudouridine synthase B; n=5;
Corynebacterineae|Rep: tRNA pseudouridine synthase B -
Corynebacterium efficiens
Length = 297
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG + VDKP+ +SH+VVS ++R K GH+GTLDP
Sbjct: 8 SGLVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDP 45
>UniRef50_A7H9F6 Cluster: tRNA pseudouridine synthase B; n=2;
Anaeromyxobacter|Rep: tRNA pseudouridine synthase B -
Anaeromyxobacter sp. Fw109-5
Length = 315
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/38 (50%), Positives = 29/38 (76%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + VDKP+ P+S +VV ++RIL+ + GH+GTLDP
Sbjct: 4 AGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDP 41
>UniRef50_A6GK85 Cluster: TruB; n=1; Plesiocystis pacifica
SIR-1|Rep: TruB - Plesiocystis pacifica SIR-1
Length = 385
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + VDKP P+SH+VV W++ L GH GTLDP
Sbjct: 12 TGVLLVDKPEGPTSHDVVGWVRWALGERSVGHCGTLDP 49
>UniRef50_Q3ABA1 Cluster: tRNA pseudouridine synthase B; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: tRNA
pseudouridine synthase B - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 288
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
GFIN+ KP +SH+VV+++++ LK K GH GTLDP
Sbjct: 3 GFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDP 39
>UniRef50_Q01SZ5 Cluster: TRNA pseudouridine synthase B; n=1;
Solibacter usitatus Ellin6076|Rep: TRNA pseudouridine
synthase B - Solibacter usitatus (strain Ellin6076)
Length = 293
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G I +DKP +SH+VV+ ++RI K +K GH GTLDP
Sbjct: 3 GVIVIDKPEGWTSHDVVNKVRRIAKTKKVGHLGTLDP 39
>UniRef50_Q67P83 Cluster: tRNA pseudouridine synthase B; n=3;
Bacteria|Rep: tRNA pseudouridine synthase B -
Symbiobacterium thermophilum
Length = 299
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G +N+ KP +SH+VV++++R L V+K GH+GTLDP
Sbjct: 14 GVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDP 50
>UniRef50_P60344 Cluster: tRNA pseudouridine synthase B; n=5;
Geobacter|Rep: tRNA pseudouridine synthase B - Geobacter
sulfurreducens
Length = 304
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
GFI +DKP +SH+VV+ +++ L+ +K GH+GTLDP
Sbjct: 3 GFIVIDKPIGLTSHDVVARVRQTLRQKKAGHTGTLDP 39
>UniRef50_Q2AIH0 Cluster: TRNA pseudouridine synthase B; n=1;
Halothermothrix orenii H 168|Rep: TRNA pseudouridine
synthase B - Halothermothrix orenii H 168
Length = 303
Score = 47.2 bits (107), Expect = 4e-04
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G I++ KP +S +VV+WI+++ V+K GH+GTLDP
Sbjct: 6 GIISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDP 42
>UniRef50_A4J5W9 Cluster: TRNA pseudouridine synthase B; n=1;
Desulfotomaculum reducens MI-1|Rep: TRNA pseudouridine
synthase B - Desulfotomaculum reducens MI-1
Length = 310
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G IN+ KP +SH+VV +++R+ V+K GH+GTLDP
Sbjct: 3 GVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDP 39
>UniRef50_Q8RA40 Cluster: tRNA pseudouridine synthase B; n=3;
Thermoanaerobacter|Rep: tRNA pseudouridine synthase B -
Thermoanaerobacter tengcongensis
Length = 285
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G +NV KP +SH+VV +I++I ++K GH+GTLDP
Sbjct: 5 GVLNVLKPPGMTSHDVVDFIRKIYGIKKVGHTGTLDP 41
>UniRef50_Q7MBB8 Cluster: tRNA pseudouridine synthase B; n=5;
Cyanobacteria|Rep: tRNA pseudouridine synthase B -
Gloeobacter violaceus
Length = 292
Score = 47.2 bits (107), Expect = 4e-04
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
GF+N+DKP+ +SH+ ++ ++R+L + GH GTLDP
Sbjct: 3 GFLNLDKPAGLTSHDCIARLRRVLGERRIGHGGTLDP 39
>UniRef50_Q18BH7 Cluster: TRNA pseudouridine synthase B; n=2;
Clostridium difficile|Rep: TRNA pseudouridine synthase B
- Clostridium difficile (strain 630)
Length = 301
Score = 46.8 bits (106), Expect = 6e-04
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +2
Query: 401 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
I++ KP+ +SH+VVS +++IL ++K GH+GTLDP
Sbjct: 5 ISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDP 39
>UniRef50_Q9WZW0 Cluster: tRNA pseudouridine synthase B; n=6;
Thermotogaceae|Rep: tRNA pseudouridine synthase B -
Thermotoga maritima
Length = 309
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+K G + KP P+SH+VV +++ LK K GH GTLDP
Sbjct: 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDP 40
>UniRef50_P74696 Cluster: tRNA pseudouridine synthase B; n=2;
Chroococcales|Rep: tRNA pseudouridine synthase B -
Synechocystis sp. (strain PCC 6803)
Length = 296
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
GF+N+ KP + +SH+ V+ ++R+L+ ++ GH GTLDP L A
Sbjct: 3 GFLNLHKPLHLTSHDCVAKVRRLLRQKRVGHGGTLDPLAEGVLPLA 48
>UniRef50_Q1EWM9 Cluster: TRNA pseudouridine synthase B; n=2;
Clostridiaceae|Rep: TRNA pseudouridine synthase B -
Clostridium oremlandii OhILAs
Length = 299
Score = 46.4 bits (105), Expect = 8e-04
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G +N+ KP +SH+VVS +++ L ++K GH+GTLDP
Sbjct: 2 NGILNILKPPGMTSHDVVSVVRKKLNMKKVGHTGTLDP 39
>UniRef50_A6C3H8 Cluster: tRNA pseudouridine synthase B; n=1;
Planctomyces maris DSM 8797|Rep: tRNA pseudouridine
synthase B - Planctomyces maris DSM 8797
Length = 310
Score = 46.4 bits (105), Expect = 8e-04
Identities = 18/47 (38%), Positives = 33/47 (70%)
Frame = +2
Query: 365 KRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
K+ +D SG +N++KP + +S +VV +++++K + GH+GTLDP
Sbjct: 4 KKSGADLKISGLLNINKPQDITSRQVVDQVQKLIKPARVGHAGTLDP 50
>UniRef50_A4M809 Cluster: TRNA pseudouridine synthase B; n=1;
Petrotoga mobilis SJ95|Rep: TRNA pseudouridine synthase
B - Petrotoga mobilis SJ95
Length = 305
Score = 46.4 bits (105), Expect = 8e-04
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+KSGF+ ++KP +SH+V++ +++ ++K GH+GTLDP
Sbjct: 1 MKSGFLVINKPKGITSHDVINILRKKFGLQKIGHAGTLDP 40
>UniRef50_A7D2R6 Cluster: Pseudouridylate synthase TruB domain
protein; n=1; Halorubrum lacusprofundi ATCC 49239|Rep:
Pseudouridylate synthase TruB domain protein -
Halorubrum lacusprofundi ATCC 49239
Length = 343
Score = 46.4 bits (105), Expect = 8e-04
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Frame = +2
Query: 344 PFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILK------------VEKTGH 487
P + P +R + + ++ G +NVDKP+ PSSH++ +W++ + + H
Sbjct: 31 PLRSPPDQRSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINETLATLDPDGSPIHGVAH 90
Query: 488 SGTLDPKL 511
+GTLDPK+
Sbjct: 91 AGTLDPKV 98
>UniRef50_A7I5M0 Cluster: Pseudouridylate synthase; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Pseudouridylate synthase -
Methanoregula boonei (strain 6A8)
Length = 322
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+G I +DKP PSSH+V +W+ +L GH+GTLDP++
Sbjct: 22 AGIIVIDKPRGPSSHQVAAWVGTMLGC-PVGHAGTLDPQV 60
Score = 39.9 bits (89), Expect = 0.066
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 490 GHARS---EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRG 660
GHA + +++G L+V + A RL KEY+ + LH V+ Q++ E+ G
Sbjct: 51 GHAGTLDPQVSGILLVMLGNAVRLAPLLLKHDKEYICLMRLHKEVDR-QRIDAMAEEFSG 109
Query: 661 ALFQRP 678
++QRP
Sbjct: 110 RIYQRP 115
>UniRef50_A7CZD5 Cluster: tRNA pseudouridine synthase B; n=1;
Opitutaceae bacterium TAV2|Rep: tRNA pseudouridine
synthase B - Opitutaceae bacterium TAV2
Length = 242
Score = 45.6 bits (103), Expect = 0.001
Identities = 16/37 (43%), Positives = 31/37 (83%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP++ +SH+V++ ++ IL++++ GH+GTLDP
Sbjct: 10 GVLLIDKPTDHTSHDVIARLRGILRMKRIGHAGTLDP 46
>UniRef50_P59884 Cluster: tRNA pseudouridine synthase B; n=1;
Synechococcus sp. WH 8102|Rep: tRNA pseudouridine
synthase B - Synechococcus sp. (strain WH8102)
Length = 291
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
GF+ +DKP+ +SH VS ++R +++ GH GTLDP + L A
Sbjct: 6 GFVVIDKPAGHTSHSCVSRLRRCYGLKRVGHGGTLDPAVTGVLPIA 51
>UniRef50_Q3A4A3 Cluster: tRNA pseudouridine synthase B; n=2;
Desulfuromonadales|Rep: tRNA pseudouridine synthase B -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 306
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + VDKP +SH VV I+R+ + K GH+GTLDP
Sbjct: 2 NGILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDP 39
>UniRef50_Q0LD35 Cluster: TRNA pseudouridine synthase B; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: TRNA
pseudouridine synthase B - Herpetosiphon aurantiacus
ATCC 23779
Length = 291
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
GF+N+DKP +S +VV +KR + ++ GH GTLDP L A
Sbjct: 4 GFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIA 49
>UniRef50_A1HSB7 Cluster: TRNA pseudouridine synthase B; n=1;
Thermosinus carboxydivorans Nor1|Rep: TRNA pseudouridine
synthase B - Thermosinus carboxydivorans Nor1
Length = 292
Score = 45.2 bits (102), Expect = 0.002
Identities = 16/37 (43%), Positives = 28/37 (75%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G +N+ KP +SH+ V++++R+ V++ GH+GTLDP
Sbjct: 4 GILNILKPPGMTSHDAVAFVRRLYGVKRVGHAGTLDP 40
>UniRef50_Q319E0 Cluster: tRNA pseudouridine synthase B; n=6;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
B - Prochlorococcus marinus (strain MIT 9312)
Length = 307
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 389 KSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
K GF+ ++K +SH+ V I+++L K GH+GTLDP++ L A
Sbjct: 4 KDGFLVINKDKGCTSHDCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIA 51
>UniRef50_Q9Z5I4 Cluster: tRNA pseudouridine synthase B; n=1;
Mycobacterium leprae|Rep: tRNA pseudouridine synthase B
- Mycobacterium leprae
Length = 320
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKPS +SH+VV+ +RI + GH+GTLDP
Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDP 49
>UniRef50_Q5PAY2 Cluster: tRNA pseudouridine synthase B; n=7;
Anaplasmataceae|Rep: tRNA pseudouridine synthase B -
Anaplasma marginale (strain St. Maries)
Length = 306
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
VK G++NVDKP + SS VV +K+I K GH+GTLDP
Sbjct: 6 VKYGWLNVDKPLHMSSGSVVGRVKKIFNC-KVGHAGTLDP 44
>UniRef50_A1A0A4 Cluster: TRNA pseudouridine synthase B; n=2;
Bifidobacterium adolescentis|Rep: TRNA pseudouridine
synthase B - Bifidobacterium adolescentis (strain ATCC
15703 / DSM 20083)
Length = 356
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG + +DKP +SH+VV+ ++ L +++ GH+GTLDP
Sbjct: 8 SGLLVIDKPQGVTSHDVVAAVRGALHMKRVGHAGTLDP 45
>UniRef50_P59880 Cluster: tRNA pseudouridine synthase B; n=2;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
B - Prochlorococcus marinus
Length = 313
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
GF+ ++KP+ +SH+ V+ ++RI +++ GH GTLDP + L A
Sbjct: 7 GFLVINKPAGLTSHDCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIA 52
>UniRef50_Q2J732 Cluster: TRNA pseudouridine synthase B; n=5;
Actinomycetales|Rep: TRNA pseudouridine synthase B -
Frankia sp. (strain CcI3)
Length = 327
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + VDKP+ +SH+VV+ +RIL + GH+GTLDP
Sbjct: 35 GLVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDP 71
>UniRef50_A6DGZ3 Cluster: tRNA pseudouridine synthase B; n=1;
Lentisphaera araneosa HTCC2155|Rep: tRNA pseudouridine
synthase B - Lentisphaera araneosa HTCC2155
Length = 245
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 350 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G K P D+ G + VDKP +SH+VV+ ++ + K GH GTLDP
Sbjct: 2 GRRRRKNPTPDF--DGILLVDKPKEWTSHDVVNLVRNRYRFNKVGHCGTLDP 51
>UniRef50_A3CMF2 Cluster: TRNA pseudouridine synthase B, putative;
n=7; Streptococcus|Rep: TRNA pseudouridine synthase B,
putative - Streptococcus sanguinis (strain SK36)
Length = 292
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
+G IN+ K + +SH+ V +++ILK +K GH GTLDP + L A
Sbjct: 2 NGIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIA 48
>UniRef50_Q6YQY6 Cluster: tRNA pseudouridine synthase B; n=4;
Candidatus Phytoplasma|Rep: tRNA pseudouridine synthase
B - Onion yellows phytoplasma
Length = 283
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+GF V+KP +SH+VV IK+ +K GH+GTLDP
Sbjct: 2 NGFFLVNKPEKMTSHDVVFQIKKKFHFDKVGHTGTLDP 39
>UniRef50_Q9KA80 Cluster: tRNA pseudouridine synthase B; n=39;
Bacilli|Rep: tRNA pseudouridine synthase B - Bacillus
halodurans
Length = 304
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + + KP +SH+ V+ ++R+LK +K GH+GTLDP
Sbjct: 4 TGILPLAKPRGMTSHDCVAKLRRLLKTKKVGHTGTLDP 41
>UniRef50_UPI000050FC6C Cluster: COG0130: Pseudouridine synthase;
n=1; Brevibacterium linens BL2|Rep: COG0130:
Pseudouridine synthase - Brevibacterium linens BL2
Length = 305
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/44 (50%), Positives = 26/44 (59%)
Frame = +2
Query: 374 ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+SD G I DKP +SH VVS I+R K GH+GTLDP
Sbjct: 1 MSDTSPQGVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDP 44
>UniRef50_Q41BZ2 Cluster: TRNA pseudouridine synthase B; n=1;
Exiguobacterium sibiricum 255-15|Rep: TRNA pseudouridine
synthase B - Exiguobacterium sibiricum 255-15
Length = 302
Score = 44.0 bits (99), Expect = 0.004
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
G + +DKP+ +SH+ V ++R+ + +K GH+GTLDP++
Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEV 43
Score = 37.1 bits (82), Expect = 0.46
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 445 FMDKTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVA 591
F + F+++K G E+TG L +C+ RAT+L + + GK YVA
Sbjct: 22 FRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDEGKRYVA 70
>UniRef50_Q1NKV8 Cluster: TRNA pseudouridine synthase B; n=2; delta
proteobacterium MLMS-1|Rep: TRNA pseudouridine synthase
B - delta proteobacterium MLMS-1
Length = 259
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 401 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
I +DKP PSS +V ++R L ++K GH+GTLDP
Sbjct: 14 IPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDP 48
>UniRef50_Q190V0 Cluster: TRNA pseudouridine synthase B; n=2;
Desulfitobacterium hafniense|Rep: TRNA pseudouridine
synthase B - Desulfitobacterium hafniense (strain DCB-2)
Length = 294
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
G INV KP +S +VV ++RIL K GH+GTLDP++
Sbjct: 3 GVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEV 41
Score = 33.9 bits (74), Expect = 4.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 469 SRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEY 585
+RK G E+TG L +C+ +ATRL + N GK Y
Sbjct: 28 TRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQGKSY 66
>UniRef50_Q0C5Z2 Cluster: TRNA pseudouridine synthase B; n=1;
Hyphomonas neptunium ATCC 15444|Rep: TRNA pseudouridine
synthase B - Hyphomonas neptunium (strain ATCC 15444)
Length = 313
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G+IN+ KP + +S + V+ IKR+ EK GH GTLDP
Sbjct: 13 TGWINLFKPVDMTSTQAVAIIKRLYNAEKVGHGGTLDP 50
>UniRef50_Q8XJS1 Cluster: tRNA pseudouridine synthase B; n=12;
Clostridium|Rep: tRNA pseudouridine synthase B -
Clostridium perfringens
Length = 294
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/38 (44%), Positives = 29/38 (76%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G IN+ K + +S +VV+ ++R+ K++K GH+GTLDP
Sbjct: 2 NGVINIYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDP 39
>UniRef50_Q6G5F5 Cluster: tRNA pseudouridine synthase B; n=2;
Bartonella|Rep: tRNA pseudouridine synthase B -
Bartonella henselae (Rochalimaea henselae)
Length = 319
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG+I +DKP S E VS IK + +K GH+GTLDP
Sbjct: 13 SGWIILDKPKGMRSTEAVSQIKYLFHAQKVGHAGTLDP 50
>UniRef50_Q8YWR1 Cluster: tRNA pseudouridine synthase B; n=8;
Cyanobacteria|Rep: tRNA pseudouridine synthase B -
Anabaena sp. (strain PCC 7120)
Length = 293
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/46 (39%), Positives = 32/46 (69%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
GFIN++K +SH+ V+ ++++L++++ GH+GTLDP L A
Sbjct: 3 GFINLNKQFGWTSHDCVARLRKMLRLKRVGHAGTLDPAATGVLPIA 48
>UniRef50_UPI0000E87C37 Cluster: tRNA pseudouridine synthase B; n=1;
Methylophilales bacterium HTCC2181|Rep: tRNA
pseudouridine synthase B - Methylophilales bacterium
HTCC2181
Length = 300
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG I VDKP SS++ +S IK I +K GH+GTLDP
Sbjct: 11 SGVILVDKPLGYSSNQALSKIKWIFSPKKAGHTGTLDP 48
>UniRef50_A6GNL1 Cluster: tRNA pseudouridine synthase B; n=1;
Limnobacter sp. MED105|Rep: tRNA pseudouridine synthase
B - Limnobacter sp. MED105
Length = 344
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG + DK + SS++ + +KR+ + EKTGH+GTLDP
Sbjct: 17 SGVLLFDKSTGFSSNQALQIVKRLYRAEKTGHTGTLDP 54
>UniRef50_A5ZAJ6 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 302
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G INV K +SH+VV+ ++ ILK +K GH GTLDP
Sbjct: 3 NGVINVYKEPGYTSHDVVAKLRGILKQKKIGHMGTLDP 40
>UniRef50_A4XL67 Cluster: TRNA pseudouridine synthase B; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep: TRNA
pseudouridine synthase B - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 287
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + VDKP +SH+VV +++++ K K GH GTLDP
Sbjct: 2 NGILLVDKPVGLTSHDVVEYVRKLFKT-KVGHCGTLDP 38
>UniRef50_Q6AJY7 Cluster: tRNA pseudouridine synthase B; n=1;
Desulfotalea psychrophila|Rep: tRNA pseudouridine
synthase B - Desulfotalea psychrophila
Length = 246
Score = 43.2 bits (97), Expect = 0.007
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G +DKP +S VVS ++RIL ++K GH+GTLDP
Sbjct: 8 AGIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDP 45
>UniRef50_P32732 Cluster: tRNA pseudouridine synthase B; n=19;
Bacilli|Rep: tRNA pseudouridine synthase B - Bacillus
subtilis
Length = 309
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+G + + KP +SH+ V I+++LK +K GH+GTLDP++
Sbjct: 3 NGVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEV 42
>UniRef50_Q2LWU1 Cluster: TRNA pseudouridine synthase B; n=1;
Syntrophus aciditrophicus SB|Rep: TRNA pseudouridine
synthase B - Syntrophus aciditrophicus (strain SB)
Length = 312
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DK +S +VV +KRIL V K GH+GTLDP
Sbjct: 3 GILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDP 39
>UniRef50_Q21H63 Cluster: TRNA pseudouridine synthase B; n=3;
Gammaproteobacteria|Rep: TRNA pseudouridine synthase B -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 313
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG I +DKP+ SS+ V+ +KR+ K GH+G+LDP
Sbjct: 12 SGVIVIDKPAGDSSNGVLQRVKRLFFANKAGHTGSLDP 49
>UniRef50_A0LHM2 Cluster: TRNA pseudouridine synthase B; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: TRNA
pseudouridine synthase B - Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB)
Length = 306
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG + +DKP +S +V+ +KR+L + K GH GTLDP
Sbjct: 7 SGLLVLDKPEGMTSSTLVTRVKRLLGLRKAGHCGTLDP 44
>UniRef50_Q6F1I4 Cluster: tRNA pseudouridine synthase B; n=3;
Mollicutes|Rep: tRNA pseudouridine synthase B -
Mesoplasma florum (Acholeplasma florum)
Length = 286
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +2
Query: 389 KSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
KSG I ++KP +++ ++ +KR L V+K GH+GTLDP
Sbjct: 3 KSGIIILNKPKGLTTNHLIQKLKRKLNVKKIGHAGTLDP 41
>UniRef50_O66922 Cluster: tRNA pseudouridine synthase B; n=1;
Aquifex aeolicus|Rep: tRNA pseudouridine synthase B -
Aquifex aeolicus
Length = 287
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP +S EVV +K LK K GH+GTLDP
Sbjct: 3 GALLIDKPKGITSTEVVERVKEKLKARKAGHTGTLDP 39
>UniRef50_Q1MZS4 Cluster: TRNA pseudouridine synthase B; n=1;
Oceanobacter sp. RED65|Rep: TRNA pseudouridine synthase
B - Oceanobacter sp. RED65
Length = 327
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG I +DKPS +S+ V+ +KR+ K GH+G LDP
Sbjct: 11 SGIIVIDKPSGMTSNGVLQQVKRLYGAAKAGHTGALDP 48
>UniRef50_A6PMJ9 Cluster: tRNA pseudouridine synthase B; n=1;
Victivallis vadensis ATCC BAA-548|Rep: tRNA
pseudouridine synthase B - Victivallis vadensis ATCC
BAA-548
Length = 254
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 365 KRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
K + + SG + VDKP +S +VV++++ V K GH GTLDP
Sbjct: 7 KHHLPPFQTSGVLLVDKPKEWTSFDVVNFVRARFNVPKVGHCGTLDP 53
>UniRef50_Q5LLT4 Cluster: tRNA pseudouridine synthase B; n=26;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase B -
Silicibacter pomeroyi
Length = 303
Score = 42.3 bits (95), Expect = 0.012
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
SG++ VDKP+ +S VV+ ++ L K GH+GTLDP+ L+ A
Sbjct: 11 SGWLVVDKPAGMTSTAVVNKVRWALGANKAGHAGTLDPEATGVLAIA 57
>UniRef50_Q8R5X8 Cluster: tRNA pseudouridine synthase B; n=3;
Fusobacterium nucleatum|Rep: tRNA pseudouridine synthase
B - Fusobacterium nucleatum subsp. nucleatum
Length = 287
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G I ++KP +S +V+ +K+ LK +K GH+GTLDP
Sbjct: 3 GIIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDP 39
>UniRef50_Q04ED7 Cluster: Pseudouridine synthase; n=1; Oenococcus
oeni PSU-1|Rep: Pseudouridine synthase - Oenococcus oeni
(strain BAA-331 / PSU-1)
Length = 298
Score = 41.9 bits (94), Expect = 0.016
Identities = 16/40 (40%), Positives = 30/40 (75%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+G + VDKP+ +S +VV+ +++I + ++ GH+GTLDP +
Sbjct: 3 NGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSV 42
>UniRef50_A3ER78 Cluster: Putative pseudouridine synthase; n=1;
Leptospirillum sp. Group II UBA|Rep: Putative
pseudouridine synthase - Leptospirillum sp. Group II UBA
Length = 325
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG VDKP+ +SH+VV +++ L + GH GTLDP
Sbjct: 14 SGMFLVDKPAGMTSHDVVDSVRKNLGFIRVGHGGTLDP 51
>UniRef50_Q5YSE0 Cluster: tRNA pseudouridine synthase B; n=31;
Actinomycetales|Rep: tRNA pseudouridine synthase B -
Nocardia farcinica
Length = 306
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + VDK +SH+VV+ ++IL K GH+GTLDP
Sbjct: 16 GLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDP 52
>UniRef50_Q9CGH0 Cluster: tRNA pseudouridine synthase B; n=3;
Lactococcus lactis|Rep: tRNA pseudouridine synthase B -
Lactococcus lactis subsp. lactis (Streptococcus lactis)
Length = 329
Score = 41.9 bits (94), Expect = 0.016
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
+G +NV K + +S +VV+ ++ ILK +K GH GTLDP + L A
Sbjct: 6 NGILNVYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPVA 52
>UniRef50_Q5FJN8 Cluster: tRNA pseudouridine synthase B; n=5;
Lactobacillus|Rep: tRNA pseudouridine synthase B -
Lactobacillus acidophilus
Length = 297
Score = 41.9 bits (94), Expect = 0.016
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
+G I +DK +S +VV ++R L + K GH+GTLDP++ L A
Sbjct: 3 NGIIVIDKDKGMTSADVVYHLRRALHIRKIGHAGTLDPEVTGVLPIA 49
>UniRef50_Q1IPJ6 Cluster: TRNA pseudouridine synthase B; n=1;
Acidobacteria bacterium Ellin345|Rep: TRNA pseudouridine
synthase B - Acidobacteria bacterium (strain Ellin345)
Length = 302
Score = 41.5 bits (93), Expect = 0.022
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+DKP+ +SH+VV+ ++R+L GH GTLDP
Sbjct: 9 IDKPAGWTSHDVVARLRRVLSERSAGHLGTLDP 41
>UniRef50_Q14NU4 Cluster: Putative trna pseudouridine synthase b
protein; n=1; Spiroplasma citri|Rep: Putative trna
pseudouridine synthase b protein - Spiroplasma citri
Length = 303
Score = 41.5 bits (93), Expect = 0.022
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G ++KP+ +S++V+ IK+ L++ K GH+GTLDP
Sbjct: 4 GIFLINKPTGKTSNQVIQEIKQKLEINKIGHAGTLDP 40
>UniRef50_A4E6U4 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 300
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
VDKP +SH+VVS +R L + GH+GTLDP
Sbjct: 5 VDKPVGCTSHDVVSQCRRALHERRVGHAGTLDP 37
>UniRef50_Q8CXQ2 Cluster: tRNA pseudouridine synthase B; n=1;
Mycoplasma penetrans|Rep: tRNA pseudouridine synthase B
- Mycoplasma penetrans
Length = 232
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+K ++KP N SS++V+ IK+ ++K GH+GTLDP
Sbjct: 15 LKDKIFGINKPKNFSSNQVIQIIKKYYGLKKIGHAGTLDP 54
>UniRef50_Q3ZXU5 Cluster: tRNA pseudouridine synthase B; n=3;
Dehalococcoides|Rep: tRNA pseudouridine synthase B -
Dehalococcoides sp. (strain CBDB1)
Length = 300
Score = 41.5 bits (93), Expect = 0.022
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G +N++KP +S +VV+ ++RI ++ GH GTLDP
Sbjct: 3 GILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDP 39
>UniRef50_Q8CY45 Cluster: tRNA pseudouridine synthase B; n=2;
Bifidobacterium longum|Rep: tRNA pseudouridine synthase
B - Bifidobacterium longum
Length = 387
Score = 41.5 bits (93), Expect = 0.022
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG + +DKP +S + V+ ++ L ++K GH+GTLDP
Sbjct: 7 SGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDP 44
>UniRef50_Q9PQD7 Cluster: tRNA pseudouridine synthase B; n=1;
Ureaplasma parvum|Rep: tRNA pseudouridine synthase B -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 227
Score = 41.1 bits (92), Expect = 0.029
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+ I ++KP +S++VV +KR++ +K GH+GTLDP
Sbjct: 4 ISKNIIIINKPIKWTSNDVVQKVKRVIGAKKVGHAGTLDP 43
>UniRef50_A0UY57 Cluster: TRNA pseudouridine synthase B; n=2;
Clostridium|Rep: TRNA pseudouridine synthase B -
Clostridium cellulolyticum H10
Length = 309
Score = 40.7 bits (91), Expect = 0.038
Identities = 15/38 (39%), Positives = 28/38 (73%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G +NV KP+ +S +V+ +++++ +K GH+GTLDP
Sbjct: 2 NGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDP 39
>UniRef50_Q18NV1 Cluster: Cbf5; n=2; Desulfurococcaceae|Rep: Cbf5 -
Thermodiscus maritimus
Length = 73
Score = 40.7 bits (91), Expect = 0.038
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
K F ++ G ++TG L V + R TR+V S ++ KEYV V LH+ VE +++
Sbjct: 5 KRMFNIKRAGHGGTLDPKVTGVLPVALQRMTRIVGSVIHSDKEYVCVMQLHAPVEE-ERL 63
Query: 634 TQGLEKLRG 660
+ L + G
Sbjct: 64 REVLNEFEG 72
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 443 VSWIKRILKVEKTGHSGTLDPKLRVALSFA 532
V+WIKR+ +++ GH GTLDPK+ L A
Sbjct: 1 VAWIKRMFNIKRAGHGGTLDPKVTGVLPVA 30
>UniRef50_Q8K9H3 Cluster: tRNA pseudouridine synthase B; n=2;
Buchnera aphidicola|Rep: tRNA pseudouridine synthase B -
Buchnera aphidicola subsp. Schizaphis graminum
Length = 312
Score = 40.7 bits (91), Expect = 0.038
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+GF+ +DKP +S+ V+ +K I K +K G+ GTLDP
Sbjct: 10 NGFLLLDKPKGMTSNNVLQKVKIIFKAKKAGYIGTLDP 47
>UniRef50_Q0AYI5 Cluster: Pseudouridylate synthase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Pseudouridylate synthase - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 299
Score = 40.3 bits (90), Expect = 0.050
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRIL-KVEKTGHSGTLDPKLRVALSFA 532
GF+N++KP +S +V+ +K++L + K GH GTLDP L A
Sbjct: 3 GFLNINKPQAMTSFDVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVA 49
>UniRef50_Q72GS9 Cluster: tRNA pseudouridine synthase B; n=2;
Thermus thermophilus|Rep: tRNA pseudouridine synthase B
- Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM
7039)
Length = 312
Score = 40.3 bits (90), Expect = 0.050
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
VDKP + +SH+VV +R L + GH+GTLDP
Sbjct: 6 VDKPLHLTSHDVVEEARRRLSTRRVGHTGTLDP 38
>UniRef50_P60345 Cluster: tRNA pseudouridine synthase B; n=37;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase B -
Rhodopseudomonas palustris
Length = 366
Score = 40.3 bits (90), Expect = 0.050
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 350 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
GN +R D G++ +DKP +S + V+ +KR+ ++ GH+GTLDP
Sbjct: 44 GNGKPRRDKRDV--HGWVVLDKPIGMTSTQAVAVLKRLFSAKRAGHAGTLDP 93
>UniRef50_Q9RUQ9 Cluster: tRNA pseudouridine synthase B; n=2;
Deinococcus|Rep: tRNA pseudouridine synthase B -
Deinococcus radiodurans
Length = 308
Score = 40.3 bits (90), Expect = 0.050
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 401 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
I DKP + +SH+VV+ +R L ++ GH+GTLDP
Sbjct: 4 IAADKPLHLTSHDVVNRARRALGTKRVGHTGTLDP 38
>UniRef50_Q1VKI1 Cluster: TRNA pseudouridine synthase B; n=1;
Psychroflexus torquis ATCC 700755|Rep: TRNA
pseudouridine synthase B - Psychroflexus torquis ATCC
700755
Length = 291
Score = 39.9 bits (89), Expect = 0.066
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+ S F V+KP +S ++ + IK+ K K GHSGTLDP
Sbjct: 3 LSSNFYLVNKPKTWTSQDLCTKIKKTYKFRKVGHSGTLDP 42
>UniRef50_A3WPV5 Cluster: TRNA pseudouridine 5S synthase; n=1;
Idiomarina baltica OS145|Rep: TRNA pseudouridine 5S
synthase - Idiomarina baltica OS145
Length = 319
Score = 39.9 bits (89), Expect = 0.066
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 368 RPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
RP +G + +DKP +S+ + +KR+ + +K GH+G LDP
Sbjct: 5 RPRKGRPINGVLLLDKPKEMTSNRAIQVVKRLYEAQKVGHTGALDP 50
>UniRef50_Q2RMR8 Cluster: tRNA pseudouridine synthase B; n=7;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase B -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 308
Score = 39.9 bits (89), Expect = 0.066
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G++ +DKP +S +VV+ ++R + K GH GTLDP
Sbjct: 12 GWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDP 48
>UniRef50_Q39H28 Cluster: tRNA pseudouridine synthase B; n=55;
Proteobacteria|Rep: tRNA pseudouridine synthase B -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 322
Score = 39.9 bits (89), Expect = 0.066
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 344 PFGNSPLKRP-ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
P + +RP + + G + +DKP SS++ + KR+L +K GH+GTLDP
Sbjct: 12 PMTTAASQRPRVPRRLLDGVLLLDKPVGLSSNDALIRAKRLLLAKKAGHTGTLDP 66
>UniRef50_Q1LSL0 Cluster: TRNA pseudouridine synthase B; n=1;
Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)|Rep: TRNA pseudouridine synthase B -
Baumannia cicadellinicola subsp. Homalodisca coagulata
Length = 317
Score = 39.5 bits (88), Expect = 0.087
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +2
Query: 374 ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
I+ + +G I +DK SS+ ++ +KR+ +V+K GH+G LDP
Sbjct: 7 INSHNINGIILLDKQEGLSSNYLLHKVKRLFRVQKAGHTGALDP 50
>UniRef50_Q03WH8 Cluster: Pseudouridine synthase; n=1; Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293|Rep:
Pseudouridine synthase - Leuconostoc mesenteroides
subsp. mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 302
Score = 39.5 bits (88), Expect = 0.087
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+ G + ++K +S +VVS ++RI+ +K GH+GTLDP +
Sbjct: 6 IVDGLLVINKSRGMTSFDVVSRVRRIIGQKKVGHAGTLDPNV 47
>UniRef50_A5CSY9 Cluster: TRNA pseudouridine synthase B; n=2;
Actinobacteria (class)|Rep: TRNA pseudouridine synthase
B - Clavibacter michiganensis subsp. michiganensis
(strain NCPPB 382)
Length = 319
Score = 39.5 bits (88), Expect = 0.087
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG + +DK +SH++V+ +R+ K GH+GTLDP
Sbjct: 14 SGLLLIDKRGEWTSHDLVARTRRLAGTRKVGHAGTLDP 51
>UniRef50_A4A2R8 Cluster: TRNA pseudouridine synthase B; n=1;
Blastopirellula marina DSM 3645|Rep: TRNA pseudouridine
synthase B - Blastopirellula marina DSM 3645
Length = 280
Score = 39.5 bits (88), Expect = 0.087
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G +N+ KP +S + V+ + R ++ K GH+GTLDP
Sbjct: 3 GILNIHKPPGWTSRDAVNRVNRFVRPAKVGHAGTLDP 39
>UniRef50_A1ICX4 Cluster: Pseudouridylate synthase; n=1; Candidatus
Desulfococcus oleovorans Hxd3|Rep: Pseudouridylate
synthase - Candidatus Desulfococcus oleovorans Hxd3
Length = 303
Score = 39.5 bits (88), Expect = 0.087
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G I V+KP+ +S +VV+ +KR K GH+GTLDP
Sbjct: 7 GIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDP 43
>UniRef50_Q8D2X8 Cluster: tRNA pseudouridine synthase B; n=1;
Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis|Rep: tRNA pseudouridine synthase B -
Wigglesworthia glossinidia brevipalpis
Length = 327
Score = 39.5 bits (88), Expect = 0.087
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Frame = +2
Query: 380 DYVKS--GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
DY+++ G + +DKP SS+ ++ IK++ K +K G+ GTLDP
Sbjct: 27 DYLRNINGILLLDKPIGLSSNLILQKIKKLFKAKKAGYIGTLDP 70
>UniRef50_Q4FVL3 Cluster: tRNA pseudouridine synthase B; n=3;
Psychrobacter|Rep: tRNA pseudouridine synthase B -
Psychrobacter arcticum
Length = 380
Score = 39.5 bits (88), Expect = 0.087
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Frame = +2
Query: 380 DYVK-SGFINVDKPSNPSSHEVVSWIKRILK-----VEKTGHSGTLDP 505
D +K SG I VDKP +S +VVS +K + K +K GH+GTLDP
Sbjct: 17 DKIKISGVILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDP 64
>UniRef50_Q1GXD4 Cluster: TRNA pseudouridine synthase B; n=1;
Methylobacillus flagellatus KT|Rep: TRNA pseudouridine
synthase B - Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875)
Length = 302
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP SS++ + +KR+ + K GH+G+LDP
Sbjct: 12 GVLLLDKPLGISSNQALQMVKRLYQAAKAGHTGSLDP 48
>UniRef50_Q8ZBC4 Cluster: tRNA pseudouridine synthase B; n=129;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase B -
Yersinia pestis
Length = 324
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + +DKP SS++V+ +KR+ + GH+G LDP
Sbjct: 12 NGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDP 49
>UniRef50_O84096 Cluster: tRNA pseudouridine synthase B; n=9;
Chlamydiales|Rep: tRNA pseudouridine synthase B -
Chlamydia trachomatis
Length = 241
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + VDKP +S ++ + R++ V+K GH+GTLDP
Sbjct: 10 GVLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDP 46
>UniRef50_Q1FIZ5 Cluster: TRNA pseudouridine synthase B; n=5;
Clostridiales|Rep: TRNA pseudouridine synthase B -
Clostridium phytofermentans ISDg
Length = 307
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G INV K +S +V + ++ ILK +K GH+GTLDP
Sbjct: 2 NGIINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDP 39
>UniRef50_A4GHL8 Cluster: TRNA pseudouridine synthase B; n=3;
Bacteria|Rep: TRNA pseudouridine synthase B - uncultured
marine bacterium EB0_35D03
Length = 303
Score = 38.7 bits (86), Expect = 0.15
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G I +DK + SS+ V+ +KR+ K GH+G+LDP
Sbjct: 12 NGVILLDKSTGKSSNTVLQEVKRLFDANKAGHTGSLDP 49
>UniRef50_Q0WVR7 Cluster: TRNA synthase-like protein; n=7;
Eukaryota|Rep: TRNA synthase-like protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 540
Score = 38.7 bits (86), Expect = 0.15
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
V+KP +S V ++R++KV+K GH+GTLDP
Sbjct: 326 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDP 358
>UniRef50_Q9PGR1 Cluster: tRNA pseudouridine synthase B; n=12;
Xanthomonadaceae|Rep: tRNA pseudouridine synthase B -
Xylella fastidiosa
Length = 302
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP+ SS+ + +R+L+ +K GH+G+LDP
Sbjct: 13 GILLLDKPAGISSNSALQIARRLLRAKKGGHTGSLDP 49
>UniRef50_Q88VL5 Cluster: tRNA pseudouridine synthase B; n=4;
Lactobacillus|Rep: tRNA pseudouridine synthase B -
Lactobacillus plantarum
Length = 307
Score = 38.7 bits (86), Expect = 0.15
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+G + + KP +S + V+ I+R+ + K GHSGTLDP +
Sbjct: 3 NGILPLYKPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNV 42
>UniRef50_A6NTY4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 289
Score = 38.3 bits (85), Expect = 0.20
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G I +DKP+ +S +V + I+ +L + GH+GTLDP
Sbjct: 3 NGIIVIDKPAGWTSMDVCAKIRGVLHERRVGHAGTLDP 40
>UniRef50_A1U5Z8 Cluster: TRNA pseudouridine synthase B; n=4;
Gammaproteobacteria|Rep: TRNA pseudouridine synthase B -
Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 307
Score = 38.3 bits (85), Expect = 0.20
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + +DKP +S+ ++ +KR+ K GH+G LDP
Sbjct: 11 NGILVIDKPQGVTSNGILQQVKRLYGAAKAGHTGALDP 48
>UniRef50_Q8Y7F3 Cluster: tRNA pseudouridine synthase B; n=31;
Bacillales|Rep: tRNA pseudouridine synthase B - Listeria
monocytogenes
Length = 304
Score = 38.3 bits (85), Expect = 0.20
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVAL 523
+G I + K +SH+ V +++IL +K GH+GTLDP++ L
Sbjct: 2 NGIIPLWKERGMTSHDCVYKLRKILHTKKVGHTGTLDPEVEGVL 45
>UniRef50_Q5FQM1 Cluster: tRNA pseudouridine synthase B; n=1;
Gluconobacter oxydans|Rep: tRNA pseudouridine synthase B
- Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 333
Score = 38.3 bits (85), Expect = 0.20
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G++ +DKP P+S ++V+ ++ +K GH GTLDP
Sbjct: 11 GWLILDKPLGPTSTDMVNKLRWAFDAKKAGHGGTLDP 47
>UniRef50_Q4ULJ9 Cluster: tRNA pseudouridine synthase B; n=12;
Rickettsia|Rep: tRNA pseudouridine synthase B -
Rickettsia felis (Rickettsia azadi)
Length = 339
Score = 37.9 bits (84), Expect = 0.27
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVE-KTGHSGTLDPKLRVALSFA 532
+ S ++N+ KP SS ++VS +K+IL E K GH+GTLD + L A
Sbjct: 1 MNSYWLNIYKPRGISSAKLVSMVKKILGKEVKVGHAGTLDVEAEGILPLA 50
>UniRef50_Q3KI82 Cluster: tRNA pseudouridine synthase B; n=9;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase B -
Pseudomonas fluorescens (strain PfO-1)
Length = 305
Score = 37.9 bits (84), Expect = 0.27
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG I +DKP +S+ + ++ +L EK GH+G+LDP
Sbjct: 12 SGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDP 49
>UniRef50_Q38W87 Cluster: tRNA pseudouridine synthase B; n=3;
Lactobacillaceae|Rep: tRNA pseudouridine synthase B -
Lactobacillus sakei subsp. sakei (strain 23K)
Length = 305
Score = 37.9 bits (84), Expect = 0.27
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
G I + K +S++ V ++RIL ++K GHSGTLDP +
Sbjct: 3 GIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNV 41
>UniRef50_Q1VNK7 Cluster: TRNA pseudouridine synthase B; n=1;
Psychroflexus torquis ATCC 700755|Rep: TRNA
pseudouridine synthase B - Psychroflexus torquis ATCC
700755
Length = 230
Score = 37.5 bits (83), Expect = 0.35
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
VDK + +S +VV IK +K +K GH+GTLDP
Sbjct: 15 VDKELDWTSFDVVKKIKNTIKCKKVGHAGTLDP 47
Score = 32.7 bits (71), Expect = 10.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 603
K K +K G TG LIVC + T+++ QN KEY F +
Sbjct: 31 KNTIKCKKVGHAGTLDPLATGLLIVCTGKNTKIINEIQNENKEYSGQFTI 80
>UniRef50_Q057K1 Cluster: TRNA pseudouridine 55 synthetase; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: TRNA
pseudouridine 55 synthetase - Buchnera aphidicola subsp.
Cinara cedri
Length = 311
Score = 37.5 bits (83), Expect = 0.35
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + +DKP SS+ ++ IK+I +K G++G+LDP
Sbjct: 10 NGILLLDKPKGISSNGILQQIKKIFLAKKAGYTGSLDP 47
>UniRef50_Q820P2 Cluster: tRNA pseudouridine synthase B; n=3;
Nitrosomonadaceae|Rep: tRNA pseudouridine synthase B -
Nitrosomonas europaea
Length = 308
Score = 37.5 bits (83), Expect = 0.35
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
++KPS SS+ + KR+L K GH+GTLDP
Sbjct: 2 LNKPSGISSNRALQISKRLLSAAKAGHTGTLDP 34
>UniRef50_Q820Z5 Cluster: tRNA pseudouridine synthase B; n=2;
Tropheryma whipplei|Rep: tRNA pseudouridine synthase B -
Tropheryma whipplei (strain TW08/27) (Whipple's
bacillus)
Length = 383
Score = 37.1 bits (82), Expect = 0.46
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
VDK S +SH V+ I+ + V+K GH GTLDP
Sbjct: 22 VDKISGITSHTAVAKIRHLTGVKKIGHCGTLDP 54
>UniRef50_Q9JYY1 Cluster: tRNA pseudouridine synthase B; n=5;
Betaproteobacteria|Rep: tRNA pseudouridine synthase B -
Neisseria meningitidis serogroup B
Length = 307
Score = 37.1 bits (82), Expect = 0.46
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + +DKP SS+ + +R+ EK GH+G LDP
Sbjct: 12 NGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDP 49
>UniRef50_P59879 Cluster: tRNA pseudouridine synthase B; n=1;
Mycoplasma gallisepticum|Rep: tRNA pseudouridine
synthase B - Mycoplasma gallisepticum
Length = 218
Score = 37.1 bits (82), Expect = 0.46
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+DKP N SS ++ K+ ++K GH+GTLDP
Sbjct: 14 IDKPKNISSAFCLNLFKKRFNIKKAGHNGTLDP 46
>UniRef50_A7PM10 Cluster: Chromosome chr14 scaffold_21, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_21, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 502
Score = 36.7 bits (81), Expect = 0.61
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
++KP +S V ++R+++V+K GH+GTLDP
Sbjct: 288 INKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDP 320
>UniRef50_Q3J9B8 Cluster: tRNA pseudouridine synthase B; n=3;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase B -
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Length = 308
Score = 36.7 bits (81), Expect = 0.61
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP SS+ + +K+I + K GH+G+LDP
Sbjct: 14 GMLLLDKPVGISSNGALQRVKQIYQARKAGHTGSLDP 50
>UniRef50_Q5NER4 Cluster: tRNA pseudouridine synthase B; n=11;
Francisella tularensis|Rep: tRNA pseudouridine synthase
B - Francisella tularensis subsp. tularensis
Length = 302
Score = 36.7 bits (81), Expect = 0.61
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + ++K + SS++V+ +K + +K GH+GTLDP
Sbjct: 9 NGVVVINKVKDISSNKVLQQLKYLFNAQKAGHTGTLDP 46
Score = 33.1 bits (72), Expect = 7.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 603
K F ++K G TG L +C RAT++ + +A KEY+A L
Sbjct: 30 KYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDADKEYIATIRL 79
>UniRef50_A4BAM7 Cluster: TRNA pseudouridine synthase B; n=1;
Reinekea sp. MED297|Rep: TRNA pseudouridine synthase B -
Reinekea sp. MED297
Length = 305
Score = 36.3 bits (80), Expect = 0.81
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + VDKP+ SS+ ++ ++ + + +K GH+G LDP
Sbjct: 11 TGVLLVDKPAGWSSNGLLQKVRWLFQAQKAGHTGALDP 48
>UniRef50_A4S143 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 279
Score = 36.3 bits (80), Expect = 0.81
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 356 SPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILK---VEKTGHSGTLDP 505
+P P + K+ I +DKP +S +VV+ ++R+ + V+K GH GTLDP
Sbjct: 33 APPAAPGDEDWKNMTILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDP 85
>UniRef50_Q609C2 Cluster: tRNA pseudouridine synthase B; n=1;
Methylococcus capsulatus|Rep: tRNA pseudouridine
synthase B - Methylococcus capsulatus
Length = 224
Score = 36.3 bits (80), Expect = 0.81
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 374 ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
IS SG + +DK S +S+ + +++L + K GH+G+LDP
Sbjct: 4 ISTATLSGVLLLDKGSGMTSNSALQRARKLLDMRKAGHTGSLDP 47
>UniRef50_P59874 Cluster: tRNA pseudouridine synthase B; n=10;
Proteobacteria|Rep: tRNA pseudouridine synthase B -
Bordetella parapertussis
Length = 244
Score = 36.3 bits (80), Expect = 0.81
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP SS+ + KR + K GH+GTLDP
Sbjct: 11 GVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDP 47
>UniRef50_Q30WI7 Cluster: tRNA pseudouridine synthase B; n=4;
Desulfovibrionaceae|Rep: tRNA pseudouridine synthase B -
Desulfovibrio desulfuricans (strain G20)
Length = 309
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + ++KP P+S ++ IKR L +K GH+GTLDP
Sbjct: 11 GVLVLNKPKGPTSAHCIARIKR-LGQKKIGHAGTLDP 46
>UniRef50_Q9ZA63 Cluster: Putative uncharacterized protein; n=1;
Neisseria meningitidis|Rep: Putative uncharacterized
protein - Neisseria meningitidis
Length = 270
Score = 35.5 bits (78), Expect = 1.4
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +2
Query: 305 DRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTG 484
D + T+ P P ++P +P+S K ++ S+ + + K I + K
Sbjct: 10 DGIKPDTHEEIPCPPVSAPTAKPVSGSKKPNSMSPKASSSAKNAKGCLKPKTIWQARKNP 69
Query: 485 HSGTLDPKL-RVALSFA*TAPRDSSNHNRTPAKST*PFSTCIQP*RIFK 628
+S T+ P+L R++ SF +A R S NR P + ST +QP IF+
Sbjct: 70 YS-TICPRLFRMSNSFTVSA-RAPSARNRFPVTKSPASSTAVQPSPIFR 116
>UniRef50_A0LE16 Cluster: TRNA pseudouridine synthase B; n=1;
Magnetococcus sp. MC-1|Rep: TRNA pseudouridine synthase
B - Magnetococcus sp. (strain MC-1)
Length = 319
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G++ + K SS +VV + R K K GH GTLDP
Sbjct: 13 GWLAIHKEPGLSSSQVVERVIRTTKANKAGHGGTLDP 49
>UniRef50_Q31GK3 Cluster: tRNA pseudouridine synthase B; n=1;
Thiomicrospira crunogena XCL-2|Rep: tRNA pseudouridine
synthase B - Thiomicrospira crunogena (strain XCL-2)
Length = 303
Score = 35.5 bits (78), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + ++KP +S+ ++ ++R+ +K GH+G LDP
Sbjct: 11 GIVLLNKPEGVTSNGLLQQVRRVYNAKKAGHTGALDP 47
>UniRef50_Q2GEU5 Cluster: TRNA pseudouridine synthase B; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: TRNA
pseudouridine synthase B - Neorickettsia sennetsu
(strain Miyayama)
Length = 235
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G++++DK S SS + +KR V+K G+ GTLDP
Sbjct: 12 GWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDP 48
>UniRef50_A5IY15 Cluster: TRNA pseudouridine synthase B; n=1;
Mycoplasma agalactiae|Rep: TRNA pseudouridine synthase B
- Mycoplasma agalactiae
Length = 288
Score = 35.1 bits (77), Expect = 1.9
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 398 FINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
F ++KP SS V++ + K++K GH+GTLDP
Sbjct: 2 FYLINKPKGCSSFAVINSFAKENKIKKIGHTGTLDP 37
>UniRef50_A3VQI2 Cluster: TRNA pseudouridine synthase B; n=1;
Parvularcula bermudensis HTCC2503|Rep: TRNA
pseudouridine synthase B - Parvularcula bermudensis
HTCC2503
Length = 320
Score = 35.1 bits (77), Expect = 1.9
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G++ +DK + S E VS ++ + +K GH+GTLDP
Sbjct: 12 GWLVLDKAYDYGSTEAVSKLRWLFDAQKAGHAGTLDP 48
>UniRef50_Q0HM19 Cluster: Periplasmic sensor signal transduction
histidine kinase precursor; n=5; Shewanella|Rep:
Periplasmic sensor signal transduction histidine kinase
precursor - Shewanella sp. (strain MR-4)
Length = 409
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 341 LPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVA 520
+ FG SP KRP + S + K N SH++V +++ ++ +T P R+
Sbjct: 150 IEFGQSPRKRPNEVHKHSAIFPLAKAFNSVSHQIVDFVQMHKELSRTISHEVRTPLARMR 209
Query: 521 LSFA*TAPRDSSNH 562
+ P+ SN+
Sbjct: 210 FALEIIRPQIDSNY 223
>UniRef50_Q6F7I5 Cluster: tRNA pseudouridine synthase B; n=6;
Proteobacteria|Rep: tRNA pseudouridine synthase B -
Acinetobacter sp. (strain ADP1)
Length = 318
Score = 34.3 bits (75), Expect = 3.3
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
SG ++KP SS+ V+ ++ + + +K GH+G LDP
Sbjct: 31 SGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDP 68
>UniRef50_UPI0000E0F5A1 Cluster: tRNA pseudouridine synthase B; n=1;
alpha proteobacterium HTCC2255|Rep: tRNA pseudouridine
synthase B - alpha proteobacterium HTCC2255
Length = 331
Score = 33.9 bits (74), Expect = 4.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G +DKP SS+ V+ ++ + K GH+G LDP
Sbjct: 11 NGVFLLDKPLGESSNNVLQKVRAMYGAAKAGHTGALDP 48
>UniRef50_A5EWY7 Cluster: TRNA pseudouridine synthase B; n=1;
Dichelobacter nodosus VCS1703A|Rep: TRNA pseudouridine
synthase B - Dichelobacter nodosus (strain VCS1703A)
Length = 297
Score = 33.9 bits (74), Expect = 4.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 392 SGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
+G + ++KP SS+ + + + + +K GH GTLDP
Sbjct: 6 NGILLLNKPRGISSNSALQKARALFQAKKAGHGGTLDP 43
>UniRef50_P59877 Cluster: tRNA pseudouridine synthase B; n=2;
Candidatus Blochmannia|Rep: tRNA pseudouridine synthase
B - Blochmannia floridanus
Length = 255
Score = 33.9 bits (74), Expect = 4.3
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
G + +DKP+ SS ++ IK++ +K G+ GTLDP
Sbjct: 17 GLLLLDKPTGFSSSFFLNKIKKLFYAKKVGYIGTLDP 53
>UniRef50_Q2NBZ4 Cluster: TRNA pseudouridine synthase B; n=1;
Erythrobacter litoralis HTCC2594|Rep: TRNA pseudouridine
synthase B - Erythrobacter litoralis (strain HTCC2594)
Length = 362
Score = 33.5 bits (73), Expect = 5.7
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKV-----EKTGHSGTLDPKLRVALSFA 532
G+I +DKP S + V +KR L+ K GH GTLDP+ L A
Sbjct: 10 GWIILDKPRGLGSTQAVGAVKRNLREGGYAKTKVGHGGTLDPEAEGVLPIA 60
>UniRef50_O51743 Cluster: tRNA pseudouridine synthase B; n=3;
Borrelia burgdorferi group|Rep: tRNA pseudouridine
synthase B - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 282
Score = 33.5 bits (73), Expect = 5.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 386 VKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLD 502
+++GF+ ++K +S E + IK+ + GH+GTLD
Sbjct: 1 MENGFLLINKEQGKTSFETLFPIKKYFNTNRVGHAGTLD 39
>UniRef50_Q2BH44 Cluster: TRNA pseudouridine synthase B; n=1;
Neptuniibacter caesariensis|Rep: TRNA pseudouridine
synthase B - Neptuniibacter caesariensis
Length = 307
Score = 33.1 bits (72), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
++KP SS+ + ++RI K GH+G LDP
Sbjct: 1 MNKPPGISSNSALQQVRRIYDAAKAGHTGALDP 33
>UniRef50_Q18NU4 Cluster: Cbf5; n=3; Sulfolobaceae|Rep: Cbf5 -
Metallosphaera sedula
Length = 73
Score = 33.1 bits (72), Expect = 7.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 442 SFMDKTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLH 606
+F KT F + G ++TG L + + +AT+++ +GKEYV + +H
Sbjct: 1 AFWVKTMFNLPRVGHGGTLDPKVTGVLPIGLGKATKIMSVVTKSGKEYVCLMEVH 55
>UniRef50_A1STR8 Cluster: Putative uncharacterized protein
precursor; n=4; Alteromonadales|Rep: Putative
uncharacterized protein precursor - Psychromonas
ingrahamii (strain 37)
Length = 328
Score = 32.7 bits (71), Expect = 10.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 469 SRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQK 630
S K+W+ A E + + TRLVK+ QN + Y NL + + ++K
Sbjct: 134 SHKNWALPSAEKEYRQAIASLVRYRTRLVKNSQNEAQFYTRADNLSAWLSAVEK 187
>UniRef50_A2FSF1 Cluster: MIZ zinc finger family protein; n=1;
Trichomonas vaginalis G3|Rep: MIZ zinc finger family
protein - Trichomonas vaginalis G3
Length = 391
Score = 32.7 bits (71), Expect = 10.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 518 QPVISDRACPNDQSFRLLKYVLSMKLLRGSWGCSVC 411
QP++ C + F L++Y LS L G W C VC
Sbjct: 266 QPMVKTNTCAHHNGFSLVQY-LSSALSTGHWFCPVC 300
>UniRef50_Q5NQ30 Cluster: tRNA pseudouridine synthase B; n=6;
Sphingomonadales|Rep: tRNA pseudouridine synthase B -
Zymomonas mobilis
Length = 303
Score = 32.7 bits (71), Expect = 10.0
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +2
Query: 395 GFINVDKPSNPSSHEVVSWIKRILKVE-----KTGHSGTLDP 505
G+I +DK S + VS +KR +++ K GH GTLDP
Sbjct: 13 GWIILDKQEGLGSTQAVSAVKRAIRIAGLPKVKVGHGGTLDP 54
>UniRef50_Q9PNJ2 Cluster: tRNA pseudouridine synthase B; n=17;
Campylobacterales|Rep: tRNA pseudouridine synthase B -
Campylobacter jejuni
Length = 272
Score = 32.7 bits (71), Expect = 10.0
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 413 KPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
KP SS+ +S +K+ K +K G+SGTLDP
Sbjct: 9 KPRGLSSNAFLSTLKKKYKNKKAGYSGTLDP 39
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,732,539
Number of Sequences: 1657284
Number of extensions: 15021175
Number of successful extensions: 36536
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 35172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36503
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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