Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00241
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   151   8e-38
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    30   0.41 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.54 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.54 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.71 
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    28   1.2  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   2.2  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   3.8  
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    26   6.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.8  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  151 bits (367), Expect = 8e-38
 Identities = 64/83 (77%), Positives = 77/83 (92%)
 Frame = +2

Query: 263 KLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEV 442
           K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN+DKP+NPSSHEV
Sbjct: 21  KIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEV 80

Query: 443 VSWIKRILKVEKTGHSGTLDPKL 511
           V+W+K+IL+VEKTGHSGTLDPK+
Sbjct: 81  VAWVKKILRVEKTGHSGTLDPKV 103



 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 42/77 (54%), Positives = 50/77 (64%)
 Frame = +1

Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
           K   +  K    G    ++TGCLI+C DRATRLVKSQQ+AGKEYV V  LH +VE  + V
Sbjct: 85  KKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGERNV 144

Query: 634 TQGLEKLRGALFQRPRL 684
              +E L GALFQRP L
Sbjct: 145 ASAIETLTGALFQRPPL 161



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/24 (75%), Positives = 24/24 (100%)
 Frame = +3

Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
           PLISAVKRQLR+R++Y+SKL++FD
Sbjct: 160 PLISAVKRQLRIRSIYESKLIEFD 183


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +2

Query: 338 PLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE-KTGHSGTLDPK-L 511
           P P G   L   +++  K G +  +  +       ++ I RI+K + K   S  L  K L
Sbjct: 511 PRP-GVRKLTHYVTEMAKGGKLPTESKNKAKVQNDLARIYRIIKSQNKMSRSSKLQIKQL 569

Query: 512 RVALSFA*TAPRDSSNHNRTPAKST*PF 595
              +  A + P  SSN  +TP K T PF
Sbjct: 570 YGQVLHALSLPLPSSNDEQTPVKETIPF 597


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 383 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 490
           ++K   + +D+P+N    E V+W++  L  E  GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 284 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 373
           P+LL   +  N   N  TP PFG SP+  P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 299 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 439
           ++DR + + NH +P P   +P K P+ +  ++   N D   + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 287 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 397
           +LL+   +  ++T  Y P+  G   LKRP+SDY+  G
Sbjct: 1   MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 748 SKSRSLLSYTVLTRSCRFTADISGASGIELHAASPSPV 635
           S+S  +  +T +  S  F++D   A   +LH +SP P+
Sbjct: 107 SESNEIAKFTQVVHSFDFSSDSESAVVEQLHPSSPIPI 144


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 312 KRSKFFNNKGQ*AVSSFFT 256
           K+SK+F+ +G   +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291


>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 609 SRREYSKSHTGLGEAAWSSIPEAPLISAVKRQLRVRTV 722
           SRR+  K+H G   +    +  APL   ++ Q ++R++
Sbjct: 10  SRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSL 47


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 230 RLQNRTFGGVKKLDTAYWPLLLKNF-DRLNVRTNHYTPLPFGNSPLKRPI 376
           ++   T    + +D + +  L+ NF +   V+TN Y P    + P   PI
Sbjct: 522 KVSENTINDEELIDDSEFTSLMSNFLESSTVQTNKYLPKSSASPPANAPI 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,858
Number of Sequences: 5004
Number of extensions: 64556
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)