Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00241
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 152 3e-37
03_03_0094 + 14378953-14380728 152 3e-37
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 72 4e-13
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 67 2e-11
11_06_0293 + 22018128-22018556 55 7e-08
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 32 0.43
06_03_0013 - 15393830-15394060,15394238-15394672 29 4.0
02_05_0358 + 28264928-28266049 29 5.2
12_02_0883 - 23982022-23982825 28 9.2
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 28 9.2
01_01_0160 + 1382646-1383162,1383255-1383402,1383475-1383958,138... 28 9.2
>07_03_1408 - 26353389-26355191
Length = 600
Score = 152 bits (368), Expect = 3e-37
Identities = 65/85 (76%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPSNPSSH
Sbjct: 58 VPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPSSH 117
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WIKR+L+V+KTGHSGTLDPK+
Sbjct: 118 EVVAWIKRLLRVDKTGHSGTLDPKV 142
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TG LIVC+DRATRLVKSQQ AGKEYV V H+AV + +V + LE L GA+FQRP L
Sbjct: 141 KVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALTGAVFQRPPL 200
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLISAVKRQLRVRT+Y+SKLL+ D
Sbjct: 199 PLISAVKRQLRVRTIYESKLLEHD 222
>03_03_0094 + 14378953-14380728
Length = 591
Score = 152 bits (368), Expect = 3e-37
Identities = 65/82 (79%), Positives = 77/82 (93%)
Frame = +2
Query: 266 LDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVV 445
LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPSNPSSHEVV
Sbjct: 65 LDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVV 124
Query: 446 SWIKRILKVEKTGHSGTLDPKL 511
+WIKR+L+VEKTGHSGTLDPK+
Sbjct: 125 AWIKRLLRVEKTGHSGTLDPKV 146
Score = 81.4 bits (192), Expect = 7e-16
Identities = 41/77 (53%), Positives = 50/77 (64%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
K + K G ++TG LIVC+DRATRLVKSQQ AGKEYV V H+AV + +V
Sbjct: 128 KRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARV 187
Query: 634 TQGLEKLRGALFQRPRL 684
+ LE L GA+FQRP L
Sbjct: 188 ARALEALTGAVFQRPPL 204
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLISAVKRQLRVRT+Y+SKLL+ D
Sbjct: 203 PLISAVKRQLRVRTIYESKLLEHD 226
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 72.1 bits (169), Expect = 4e-13
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +2
Query: 353 NSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
+SPLK+PI+ ++ G IN++KPSN SHEV++W K +L +EKT H+GTLDPK+
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKV 69
Score = 35.5 bits (78), Expect = 0.046
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYV 588
++TG LIVC++RATRLVKS +YV
Sbjct: 68 KVTGNLIVCVNRATRLVKSWNGVMLKYV 95
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/74 (50%), Positives = 44/74 (59%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
K + K G ++TG LIVC+DRATRLVKSQQ AGKEYV V H+A
Sbjct: 103 KRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAA-----DT 157
Query: 634 TQGLEKLRGALFQR 675
+ LE L GA+FQR
Sbjct: 158 ARALEALTGAMFQR 171
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +2
Query: 440 VVSWIKRILKVEKTGHSGTLDPKL 511
VV+WIKR+L+V KTGHSGTLDPK+
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKV 121
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLISAVKRQLRVRT+Y+SKLL+ D
Sbjct: 173 PLISAVKRQLRVRTIYESKLLEHD 196
>11_06_0293 + 22018128-22018556
Length = 142
Score = 54.8 bits (126), Expect = 7e-08
Identities = 28/54 (51%), Positives = 33/54 (61%)
Frame = +1
Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 615
K + K G ++TG LIVC+D ATRLVKSQQ AGKEY V H+AV
Sbjct: 64 KRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAV 117
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +2
Query: 440 VVSWIKRILKVEKTGHSGTLDPKL 511
VV+WIKR+L+V KTGHSGTLDPK+
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKV 82
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 353 NSPLKRPISDYVKSGFINVDKPSNP--SSHEVVSWIKRILKVEKTGHSGTLDP 505
N+ KR + V +N+ P +S V ++R++ V+K GH+GTLDP
Sbjct: 291 NARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVNVQKVGHAGTLDP 343
>06_03_0013 - 15393830-15394060,15394238-15394672
Length = 221
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 620 IFKKSHRAWRSCVELYSRGPAYIGREATTSCQDG 721
++ +R WR+ + ++ G A + R +TS QDG
Sbjct: 181 VWNHDYRRWRAGMRGFALGVAVLARRMSTSAQDG 214
>02_05_0358 + 28264928-28266049
Length = 373
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 653 SFSKPCVTF*IFSTAECKLKTATYSLPAFCCDLTSLVARSMQTIRQPVISDRACPNDQSF 474
+F CV + +T C L AT SLP T+ A + +Q + R+ N +SF
Sbjct: 171 AFHASCVDAWLRTTPSCPLCRATVSLPHPPLP-TAAAAAASNAAQQDPLDSRSSNNSRSF 229
Query: 473 RL 468
R+
Sbjct: 230 RV 231
>12_02_0883 - 23982022-23982825
Length = 267
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 320 RTNHYTPLPFGNSPLKRPISDYVKSGFINV-DKPSNPSSHEV 442
RT PLP LK+P SDY + G + + P P++ EV
Sbjct: 64 RTARNQPLP--EQHLKKPASDYAQGGTSDAPETPPKPTTSEV 103
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +2
Query: 374 ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 490
+SD+V + +D+P+ S + +W+ R+ +++ H+
Sbjct: 25 LSDFVMTSK-GIDRPAERSFQSIYNWLMRVFRIDSEVHT 62
>01_01_0160 +
1382646-1383162,1383255-1383402,1383475-1383958,
1383986-1384084
Length = 415
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +2
Query: 374 ISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 490
+SD+V + +D+P+ S + +W+ R+ +++ H+
Sbjct: 25 LSDFVMTSK-GIDRPAERSFQSIYNWLMRVFRIDSEVHT 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,107,360
Number of Sequences: 37544
Number of extensions: 413150
Number of successful extensions: 1005
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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