Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00241
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 4e-30
SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27) 32 0.57
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_54984| Best HMM Match : Bromodomain (HMM E-Value=4.1) 29 4.1
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 28 9.4
SB_11671| Best HMM Match : C2 (HMM E-Value=4e-39) 28 9.4
SB_35182| Best HMM Match : CUB (HMM E-Value=0) 28 9.4
SB_16726| Best HMM Match : PHD (HMM E-Value=7.8e-13) 28 9.4
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 128 bits (310), Expect = 4e-30
Identities = 53/72 (73%), Positives = 66/72 (91%)
Frame = +2
Query: 296 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 475
+N+D+LN+RT H+TPLP G SPLKR I DY+ SGFIN+DKP+NPSSHEVV+W++RIL+VE
Sbjct: 48 RNYDKLNIRTGHFTPLPNGCSPLKREIKDYISSGFINLDKPANPSSHEVVAWLRRILRVE 107
Query: 476 KTGHSGTLDPKL 511
KTGHSGTLDPK+
Sbjct: 108 KTGHSGTLDPKV 119
Score = 85.0 bits (201), Expect = 6e-17
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCID+ATRLVKSQQ AGKEYV + LH+A+E ++ + +E L GALFQRP L
Sbjct: 118 KVTGCLIVCIDKATRLVKSQQGAGKEYVCIVRLHNAIEGQAELAKTIETLTGALFQRPPL 177
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/24 (79%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLISAVKRQLR+RT+Y+SKLL++D
Sbjct: 176 PLISAVKRQLRIRTIYESKLLEYD 199
>SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27)
Length = 275
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 221 DDWRLQNRTFGGVKKLDTAYW-PLLLKNFDRLNVRTNH 331
D+WR+Q + G +LD Y+ P + F R +VR H
Sbjct: 210 DEWRVQRKARKGFIRLDAKYFLPFFTRKFTRQDVRNAH 247
>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 648 LQALCDFLNILYG*MQVENGYVLFAGVLL*FDESRGAVYANDKATRN 508
LQ LC + +YG ++GY + +L+ FD + + A D ++N
Sbjct: 158 LQTLCALVQAIYGKKMSDHGYDVI-NILIGFDSAEAQMQATDNVSQN 203
>SB_54984| Best HMM Match : Bromodomain (HMM E-Value=4.1)
Length = 99
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 460 YFKSRKDWSFGHARSEITGCLIVCIDRATRL 552
Y S DW FG R E+T ++ C+DR L
Sbjct: 29 YEPSEADW-FGEGRDEMTSRIMGCVDRLCEL 58
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 596 KTATYSLPAFCCDLTSLVARSMQTIRQPVISDRACPNDQSFRL 468
K + YS PA ++T L ++TI P+I+D +D++FR+
Sbjct: 1684 KDSDYSEPAVK-EITFLQNEVVKTINVPIINDHKVEDDETFRV 1725
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3
Query: 691 ADISGASGIELHA 653
ADISGA GIELHA
Sbjct: 228 ADISGAGGIELHA 240
>SB_11671| Best HMM Match : C2 (HMM E-Value=4e-39)
Length = 407
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 362 LKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALS 526
L++PI + G I++ P+ + I R + GH GT DP +++A S
Sbjct: 259 LEKPIETTSELGDIHISLSYYPTLDRLTIIILRAANLRTIGHKGT-DPFVKIAFS 312
>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
Length = 963
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 362 LKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKLRVALS 526
L++PI + G I++ P+ + I R + GH GT DP +++A S
Sbjct: 815 LEKPIETTSELGDIHISLSYYPTLDRLTIIILRAANLRTIGHKGT-DPFVKIAFS 868
>SB_16726| Best HMM Match : PHD (HMM E-Value=7.8e-13)
Length = 112
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 434 GSWGCSVCRR**SQI*RNQRWGVLKASCRTVAACNG 327
GSW C CR WGV K C+ +AC G
Sbjct: 82 GSWLCQPCR-----------WGVAKPPCKLCSACGG 106
>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1392
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +2
Query: 197 WCFVGSFSDDWRL----QNRTFGGVKKLDTAYWPLLLKNFDRLNVRTNHYTPL 343
W F+G SDD R+ ++ + G +K A+W L ++ + TP+
Sbjct: 263 WIFIGESSDDSRVLIERESSSLDGSEKRFLAFWELFARDHRIFGIAVTFGTPV 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,346,423
Number of Sequences: 59808
Number of extensions: 480026
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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