Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00241
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein. 153 5e-37
BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita ... 153 5e-37
BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita ... 153 5e-37
AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein. 153 5e-37
AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein. 153 5e-37
AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein. 153 5e-37
AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein. 153 5e-37
>U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein.
Length = 514
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein.
Length = 524
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
>AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 153 bits (372), Expect = 5e-37
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +2
Query: 257 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 436
V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSH
Sbjct: 44 VAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSH 103
Query: 437 EVVSWIKRILKVEKTGHSGTLDPKL 511
EVV+WI+RIL+VEKTGHSGTLDPK+
Sbjct: 104 EVVAWIRRILRVEKTGHSGTLDPKV 128
Score = 86.6 bits (205), Expect = 8e-17
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 505 EITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFQRPRL 684
++TGCLIVCI+RATRLVKSQQ+AGKEYV + LH+A+E ++++ LE L GALFQRP L
Sbjct: 127 KVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPL 186
Score = 43.6 bits (98), Expect = 8e-04
Identities = 17/24 (70%), Positives = 24/24 (100%)
Frame = +3
Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
PLI+AVKRQLRVRT+Y+SK++++D
Sbjct: 185 PLIAAVKRQLRVRTIYESKMIEYD 208
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,670,270
Number of Sequences: 237096
Number of extensions: 2202240
Number of successful extensions: 8300
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8300
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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