Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00241
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...   144   4e-35
U61945-4|AAB03127.2|  172|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    29   4.7  
AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical...    29   4.7  
AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymeras...    29   4.7  
AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode asta...    28   6.2  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    28   8.2  

>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score =  144 bits (350), Expect = 4e-35
 Identities = 64/83 (77%), Positives = 72/83 (86%)
 Frame = +2

Query: 263 KLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEV 442
           KLD + WPLLLKN+D+LNVRTNHYTP   G SPLKR I +Y+ SGF N+DKPSNPSSHEV
Sbjct: 34  KLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEV 93

Query: 443 VSWIKRILKVEKTGHSGTLDPKL 511
           VSWIKRIL+ EKTGHSGTLDPK+
Sbjct: 94  VSWIKRILRCEKTGHSGTLDPKV 116



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 44/77 (57%), Positives = 52/77 (67%)
 Frame = +1

Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
           K   +  K    G    +++GCLIVCIDR TRL KSQQ AGKEY+ +F LH  VE+ +KV
Sbjct: 98  KRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRKV 157

Query: 634 TQGLEKLRGALFQRPRL 684
            Q LEKL GALFQRP L
Sbjct: 158 KQALEKLTGALFQRPPL 174



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/24 (70%), Positives = 23/24 (95%)
 Frame = +3

Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
           PLISAVKRQLR+RTVY++K +++D
Sbjct: 173 PLISAVKRQLRIRTVYENKFIEYD 196


>U61945-4|AAB03127.2|  172|Caenorhabditis elegans Hypothetical
           protein C49C8.2 protein.
          Length = 172

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 544 TRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALF 669
           T L +  Q++ KE ++ FN H   + +QKV   ++   G  F
Sbjct: 42  TMLERVSQSSNKELISDFNKHQIPQRLQKVASLVKNSHGHYF 83


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 388 QIWLHQRRQTEQPQLPRSSFMDKTYFKSRKDWSFGHARSEITGCLI--VCIDRATRLVKS 561
           +++LH   + EQ Q  RSS  +  +    +    G   ++I+   +  V   +    VKS
Sbjct: 81  ELYLHVNLKKEQ-QTSRSSIFESIFLMLEELGIIGERVTKISKLCVPFVHFGKVRISVKS 139

Query: 562 QQNAGKEYVAVFNLHSAV 615
           Q+ +G   V +FNL  ++
Sbjct: 140 QEKSGNVIVEIFNLFGSL 157


>AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical
           protein Y41C4A.10 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 320 AHLSDRSFSTTKASKRCPASSRLR 249
           A LSD  FS+T A  +CPA+  LR
Sbjct: 64  ATLSDAGFSSTNAKAQCPAALGLR 87


>AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymerase
           II transcriptionfactor SIII p18 subunit protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 320 AHLSDRSFSTTKASKRCPASSRLR 249
           A LSD  FS+T A  +CPA+  LR
Sbjct: 64  ATLSDAGFSSTNAKAQCPAALGLR 87


>AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode astacin
           protease protein27 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 656 RSFSKPCVTF*IFSTAECKLKTATYSLPAFCCD 558
           ++   PC     F+  E KL   T + P FCCD
Sbjct: 356 KNIISPCSMSCSFNALELKLSNFTMTGPRFCCD 388


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 433 PRSSFMDKTYFKSRKDWSFGHARSEITGCLIVCIDRATRL-VKSQQNAG 576
           P   F    Y+K+   WS+ +  S +T C     D+AT L +KS +  G
Sbjct: 533 PMPVFSFNRYYKTTYTWSYRYVDSNVTACADTS-DKATCLSLKSAKEQG 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,249
Number of Sequences: 27780
Number of extensions: 358484
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)