Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00241
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.44 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.76 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 497 ACPNDQSFRLLKYVLSMKLLRGSWGCSVCR 408
           A P D +  + +YV+  K+ +GSW   + R
Sbjct: 897 AAPYDGNSPIKRYVIEYKISKGSWETDIDR 926



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
 Frame = +2

Query: 350  GNSPLKRPISDY-VKSGF--INVDKPSNPSSHEVVSWIKRI-------LKVEKTGHSGTL 499
            GNSP+KR + +Y +  G    ++D+   P S + V+ +  +       L++      G  
Sbjct: 902  GNSPIKRYVIEYKISKGSWETDIDRVLVPGSQQNVAGVFNLRPATTYHLRIVAENEIGAS 961

Query: 500  DPKLRVALSFA*TAP 544
            DP   V +  A  AP
Sbjct: 962  DPSDTVTIITAEEAP 976


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 320 AHLSDRSFSTTKASKRCPASSRLRRFD 240
           A L  +SF  ++ S RC A+S LR F+
Sbjct: 7   AFLPVKSFRESRCSVRCSAASGLRWFE 33


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 728 VVHRPDTKL 702
           V+HRPDTKL
Sbjct: 146 VIHRPDTKL 154


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 728 VVHRPDTKL 702
           V+HRPDTKL
Sbjct: 146 VIHRPDTKL 154


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 422 NPSSHEVVSWIKRI 463
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 422 NPSSHEVVSWIKRI 463
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 614 TAECKLKTATYSLPAFCCDLT 552
           T + KL   TY+L    CDLT
Sbjct: 351 TVQNKLYEETYALAPAGCDLT 371


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 425 PSSHEVVSWIKRI 463
           PS+H++  W+++I
Sbjct: 327 PSTHKMAPWVRKI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,090
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)