Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00241
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ...   146   1e-35
At5g14460.1 68418.m01692 pseudouridylate synthase TruB family pr...    39   0.004
At1g70100.3 68414.m08067 expressed protein                             31   1.1  
At1g70100.2 68414.m08066 expressed protein                             31   1.1  
At1g70100.1 68414.m08065 expressed protein                             31   1.1  
At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase, ...    30   1.9  
At3g21210.1 68416.m02680 universal stress protein (USP) family p...    30   1.9  
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    30   1.9  
At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
           NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
           protein NAP57) {Rattus norvegicus}; contains Pfam
           profiles PF01509: TruB family pseudouridylate synthase
           (N terminal domain), PF01472: PUA domain; supporting
           cDNA gi|8901185|gb|AF234984.2|AF234984
          Length = 565

 Score =  146 bits (354), Expect = 1e-35
 Identities = 62/96 (64%), Positives = 82/96 (85%)
 Frame = +2

Query: 224 DWRLQNRTFGGVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFI 403
           D+ ++ ++F     +DT+ WP+LLKN+DRLNVRT HYTP+  G+SPLKRP+ +Y++ G I
Sbjct: 26  DYMIKPQSF--TPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVI 83

Query: 404 NVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKL 511
           N+DKP+NPSSHEVV+WIKRIL+VEKTGHSGTLDPK+
Sbjct: 84  NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKV 119



 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 45/77 (58%), Positives = 52/77 (67%)
 Frame = +1

Query: 454 KTYFKSRKDWSFGHARSEITGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKV 633
           K   +  K    G    ++TG LIVCIDRATRLVKSQQ AGKEYV V  LHSAV ++ KV
Sbjct: 101 KRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKV 160

Query: 634 TQGLEKLRGALFQRPRL 684
            + LE L GA+FQRP L
Sbjct: 161 ARALESLTGAVFQRPPL 177



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/24 (79%), Positives = 24/24 (100%)
 Frame = +3

Query: 678 PLISAVKRQLRVRTVYDSKLLDFD 749
           PLISAVKRQLR+RT+Y+SKLL++D
Sbjct: 176 PLISAVKRQLRIRTIYESKLLEYD 199


>At5g14460.1 68418.m01692 pseudouridylate synthase TruB family
           protein similar to SP|P09171 tRNA pseudouridine synthase
           B (EC 4.2.1.70) (tRNA pseudouridine 55 synthase)
           (Pseudouridylate synthase) (Uracil hydrolyase)
           {Escherichia coli O157:H7}; contains Pfam profile
           PF01509: TruB family pseudouridylate synthase (N
           terminal domain)
          Length = 540

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 407 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDP 505
           V+KP   +S  V   ++R++KV+K GH+GTLDP
Sbjct: 326 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDP 358


>At1g70100.3 68414.m08067 expressed protein
          Length = 504

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 293 LKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 397
           +K  D+ NVRTNH    P  N   K+P++  V SG
Sbjct: 236 IKKTDK-NVRTNHMRASPKSNQVTKKPVTSKVVSG 269


>At1g70100.2 68414.m08066 expressed protein
          Length = 482

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 293 LKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 397
           +K  D+ NVRTNH    P  N   K+P++  V SG
Sbjct: 236 IKKTDK-NVRTNHMRASPKSNQVTKKPVTSKVVSG 269


>At1g70100.1 68414.m08065 expressed protein
          Length = 467

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 293 LKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 397
           +K  D+ NVRTNH    P  N   K+P++  V SG
Sbjct: 236 IKKTDK-NVRTNHMRASPKSNQVTKKPVTSKVVSG 269


>At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase,
           putative strong similarity to L-galactono-1,4-lactone
           dehydrogenase, Brassica oleracea, Z97060 [gi:2760543],
           and gi:3986289 from Ipomea batatas
          Length = 610

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 604 HSAVENIQKVTQGLEKLRGALFQRPRLYRP*SDNFVSGRCTTVNSW 741
           H+ V N+Q++ +  +KL  A      LY P +D  V   C  V+ W
Sbjct: 295 HTYVSNLQEIKKNHKKLLSANKHVKYLYIPYTDTVVVVTCNPVSKW 340


>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 727 SYTVLTRSCRFTADISGASGIE--LHAASPSPV*LFEYS 617
           +YT   R C FT D+S AS  E  +H   P P+ L   S
Sbjct: 509 AYTCCARDCNFTLDVSCASIAESLIHRFHPHPIYLIHES 547


>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 617 STAECKLKTATYSLPAFCCDLTSLVARSMQTIRQPVISDRACPNDQSF 474
           S A CK   A +S P FCC       ++        +   ACP+  S+
Sbjct: 174 SVAACKSACAAFSSPEFCCTGAHATPQTCSPTYYSSMFKNACPSAYSY 221


>At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 266 LDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKS-GFINVDKPSNPSSHEV 442
           ++ A+  L+  ++D+LN  ++H       N  LK    DY+ S  F N  K  NP SH +
Sbjct: 57  VNVAHSHLIQSDWDKLNKLSDHLDSFRVKNVLLKIQ-KDYLLSLEFFNWAKTRNPGSHSL 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,453
Number of Sequences: 28952
Number of extensions: 336543
Number of successful extensions: 911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)