Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00239
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    83   1e-16
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    33   0.16 
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    33   0.16 
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    33   0.16 

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 43/62 (69%)
 Frame = +1

Query: 7   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 186
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 187 KG 192
           KG
Sbjct: 61  KG 62


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +1

Query: 7   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 177
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 165 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCGASLSDIMAKRNMKPE 302
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 588


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 165 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCGASLSDIMAKRNMKPE 302
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 505


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 165 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCGASLSDIMAKRNMKPE 302
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,005,113
Number of Sequences: 27780
Number of extensions: 168293
Number of successful extensions: 327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)