Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00239
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.2  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   5.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   5.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   5.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   5.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   5.7  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   7.5  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   7.5  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   7.5  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   7.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 169 YRRKFKKGQEEE 204
           YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 16  GLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 117
           G C Y    + PG  K+  K+D   F F + +CE
Sbjct: 134 GTCLY----VPPGIFKSTCKIDITWFPFDDQRCE 163


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGFTF*IQE 97
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGFTF*IQE 97
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGFTF*IQE 97
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGFTF*IQE 97
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGFTF*IQE 97
           P Y+   PP  MG F   IQE
Sbjct: 340 PVYYGNFPPRPMGPFVS-IQE 359


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGF 115
           P Y+   PP  MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGF 115
           P Y+   PP  MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGF 115
           P Y+   PP  MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 159 PCYFTRIPPHQMGGF 115
           P Y+   PP  MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,378
Number of Sequences: 438
Number of extensions: 1961
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)