Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00237
         (453 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 31   NINKMSYLTRKIALIPR 81
            N+N +S+ TR++ ++P+
Sbjct: 1026 NMNNVSWGTREVTVVPK 1042



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 203  SKDNTVLKMPDLDEVKRAP*MKPEFARKQLSNL 301
            +++ TV+  PD + V++    KPE   K L+ L
Sbjct: 1034 TREVTVVPKPDPNAVQKIEEKKPEKKDKVLTFL 1066


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 31   NINKMSYLTRKIALIPR 81
            N+N +S+ TR++ ++P+
Sbjct: 1026 NMNNVSWGTREVTVVPK 1042



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 203  SKDNTVLKMPDLDEVKRAP*MKPEFARKQLSNL 301
            +++ TV+  PD + V++    KPE   K L+ L
Sbjct: 1034 TREVTVVPKPDPNAVQKIEEKKPEKKDKVLTFL 1066


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 210 SLLVSSGKALELLVRKIIVLMKSYN 136
           S +VSS       +R  I  +K YN
Sbjct: 265 STMVSSANRRREFIRSAITFIKQYN 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,874
Number of Sequences: 336
Number of extensions: 1877
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)