Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00237
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    28   0.77 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   2.3  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   4.1  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   5.4  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   5.4  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    25   5.4  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   9.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   9.5  

>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 284 KQLSNLTLTTEHRWYPRARD 343
           K L+NL LTT   WYP   D
Sbjct: 225 KNLNNLNLTTNSHWYPCGPD 244


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 255 ALLTSSKSGIFKTVLSLLVSSGKALELLVRKIIVLMKSYNGRA 127
           +L+ SSK G  + VLS++   G+A  L  R    +M++   RA
Sbjct: 846 SLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARA 888


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 76  PRVALSRFYNKIVITDDGSTI 138
           PR+ +S FY K+  + DG+T+
Sbjct: 384 PRLRISSFYVKLACSPDGATL 404


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 305 LTTEHRWYPRARDKKGQK 358
           L +  RW  RARD+K QK
Sbjct: 23  LKSSRRWTDRARDRKRQK 40


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 330 LELEIKRARKLEWIDPIW 383
           ++L+ KRA+K++W D  W
Sbjct: 198 IQLQEKRAKKIDWDDVPW 215


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  NVLFNSQNSINPKSGIK 92
           N +FNSQNS+ P+  I+
Sbjct: 217 NTIFNSQNSLTPQKKIQ 233


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 323 WYPRARDKKGQKTGMD*PYLEPSYFYWYRCNIACFTSKK 439
           W  +  D+K      D P ++PS  +W     +CF++++
Sbjct: 136 WNDQFFDEKNSLLNFD-PQVQPSTSFWVCVPYSCFSNQQ 173


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +2

Query: 155 TMIFLTSNSRALPEETSKDNTVLKM-PDLDEVKRAP*MKPEFARKQLSNLTLTTEHRWYP 331
           T +   S S   PE+ ++DN++L + P  D  K    +    +RK   N    T   +  
Sbjct: 204 TKLSFLSTSNIDPEDLTEDNSILPVSPTRDSTKSHKTLNFSPSRKNNLNARPLTMSLYTN 263

Query: 332 RARDKKGQKT 361
            + +K  Q T
Sbjct: 264 TSEEKDSQPT 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,170
Number of Sequences: 5004
Number of extensions: 31486
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)