Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00237
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      28   3.1  
SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)                    28   4.2  
SB_58764| Best HMM Match : Sex_peptide (HMM E-Value=5.7)               27   9.6  
SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)              27   9.6  
SB_56021| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 246 TSSKSGIFKTVLSLLVSSGKALELLVRKIIVLMKSYNGRAIVSDH 112
           TS+++      L+L   S K + LLV+K  V +  Y+ RA   DH
Sbjct: 245 TSTRNVTQTEALNLFRQSDKKINLLVQKEAVTINGYSVRATSIDH 289


>SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)
          Length = 320

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 348 FLSRALGYHRCSVV-NVRFDSCFLANSGFIHGALLTSSKSGIFKTVLSLLVSSGKALELL 172
           F+++AL Y+R  ++ ++ F SC       IHG L+  + +      +++ ++   A+ + 
Sbjct: 170 FINKALQYNRQLILRSITFFSCLSTTPASIHGQLIAIAIAIAIAIAIAIAIAIAIAIAIA 229

Query: 171 VRKIIVLM 148
           +   I ++
Sbjct: 230 IAIAIAIV 237


>SB_58764| Best HMM Match : Sex_peptide (HMM E-Value=5.7)
          Length = 418

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 357 FWPFLSRALGYHRCSVVNVRFDS 289
           FW FL   L   RC VV  RF++
Sbjct: 248 FWTFLCEDLTMERCKVVPKRFEN 270


>SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)
          Length = 665

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 52  LTRKIALIPRVALSRFYNKIVITDDGSTIVALHQDYD 162
           +TR++  +  +ALS  ++ I  T +G T + LH   D
Sbjct: 619 ITREVTRLQSLALSAVFSHISSTVEGLTTIRLHDARD 655


>SB_56021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 357 FWPFLSRALGYHRCSVVNVRFDS 289
           FW FL   L   RC VV  RF++
Sbjct: 127 FWTFLCEDLTMERCKVVPKRFEN 149


>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 357 FWPFLSRALGYHRCSVVNVRFDS 289
           FW FL   L   RC VV  RF++
Sbjct: 127 FWTFLCEDLTMERCKVVPKRFEN 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,149
Number of Sequences: 59808
Number of extensions: 202331
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)