Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00237
         (453 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533495-1|CAG38526.1|  142|Homo sapiens MRPL42 protein.               34   0.26 
BC040240-1|AAH40240.1|  142|Homo sapiens mitochondrial ribosomal...    34   0.26 
AK000285-1|BAA91054.1|  142|Homo sapiens protein ( Homo sapiens ...    34   0.26 
AF135160-1|AAF43784.1|  142|Homo sapiens unknown protein.              34   0.26 
AB051626-1|BAB54953.1|   51|Homo sapiens mitochondrial ribosomal...    31   1.4  
AK093449-1|BAC04169.1|  422|Homo sapiens protein ( Homo sapiens ...    29   9.8  

>CR533495-1|CAG38526.1|  142|Homo sapiens MRPL42 protein.
          Length = 142

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 KIVITDDGSTIVALHQDYDFPYEQFKSFTRRD 201
           ++ +T DG TIV  H   D PYE  K   R D
Sbjct: 48  ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD 79



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 284 KQLSNLTLTTEHRWYPRARDKKGQK 358
           +QLS +  TT+HRWYP  R  + +K
Sbjct: 110 EQLSKMFFTTKHRWYPHGRYHRCRK 134


>BC040240-1|AAH40240.1|  142|Homo sapiens mitochondrial ribosomal
           protein L42 protein.
          Length = 142

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 KIVITDDGSTIVALHQDYDFPYEQFKSFTRRD 201
           ++ +T DG TIV  H   D PYE  K   R D
Sbjct: 48  ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD 79



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 284 KQLSNLTLTTEHRWYPRARDKKGQK 358
           +QLS +  TT+HRWYP  R  + +K
Sbjct: 110 EQLSKMFFTTKHRWYPHGRYHRCRK 134


>AK000285-1|BAA91054.1|  142|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20278 fis, clone HEP03158. ).
          Length = 142

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 KIVITDDGSTIVALHQDYDFPYEQFKSFTRRD 201
           ++ +T DG TIV  H   D PYE  K   R D
Sbjct: 48  ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD 79



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 284 KQLSNLTLTTEHRWYPRARDKKGQK 358
           +QLS +  TT+HRWYP  R  + +K
Sbjct: 110 EQLSKMFFTTKHRWYPHGRYHRCRK 134


>AF135160-1|AAF43784.1|  142|Homo sapiens unknown protein.
          Length = 142

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 KIVITDDGSTIVALHQDYDFPYEQFKSFTRRD 201
           ++ +T DG TIV  H   D PYE  K   R D
Sbjct: 48  ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD 79



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 284 KQLSNLTLTTEHRWYPRARDKKGQK 358
           +QLS +  TT+HRWYP  R  + +K
Sbjct: 110 EQLSKMFFTTKHRWYPHGRYHRCRK 134


>AB051626-1|BAB54953.1|   51|Homo sapiens mitochondrial ribosomal
           protein L42 protein.
          Length = 51

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 284 KQLSNLTLTTEHRWYPRAR 340
           +QLS +  TT+HRWYP  R
Sbjct: 33  EQLSKMFFTTKHRWYPHGR 51


>AK093449-1|BAC04169.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36130 fis, clone TESTI2024560. ).
          Length = 422

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 155 TMIFLTSNS-RALPEETSKDNTVLKMPDLDEVKRAP*MKPEFARKQLSNLTLTTEHRWY 328
           T++F  ++  RA  EE  K   +LK   L + K    +K       +SN+TLT E + Y
Sbjct: 288 TVVFENNDLIRAKQEEKEKLKNILKPGCLQDTKSKSELKESSKHVTISNITLTFEGKRY 346


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,439,564
Number of Sequences: 237096
Number of extensions: 1058518
Number of successful extensions: 1655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)