Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00237
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   1.6  
L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promot...    28   3.7  
AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical ...    27   4.8  
AF025464-6|AAB71012.2|  376|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     27   8.4  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 161 IFLTSNSRALPEETSKDNTVLKMPDLDE 244
           I L SN + LP+ET+KD   ++ P++++
Sbjct: 106 ILLPSNMKVLPKETTKDFKKMEKPEMEK 133


>L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promoting
           complex; seealso mat protein 2 protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 336 LEIKRARKLEWIDPIWNLPIFIGID 410
           L++KR RKLEW+  +  + + I ID
Sbjct: 527 LDVKRDRKLEWLRSVGCVEVSINID 551


>AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical
           protein F47G6.3 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 173 SNSRALPEETSKDNTVLKMPDLDEVKRAP*MKPEFARKQLSNLTLTTEHRWYPRARDKK 349
           +N  + P  TSKD+T  K    DEV RA  + P    K    + + TE +      +KK
Sbjct: 95  TNQTSTPVPTSKDSTGSKSKKSDEVGRA--LTPGVPGKNSKAMAVETEQKSKESKVEKK 151


>AF025464-6|AAB71012.2|  376|Caenorhabditis elegans Hypothetical
           protein F53G2.2 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 394 IGRFQIGSIHSSFLALFISSSR 329
           I RF+IGS+HS ++A  + S++
Sbjct: 296 IDRFEIGSVHSFYIASVMKSNK 317


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 394 IGRFQIGSIHSSFLALFISSSRVPPMFS 311
           I R  +G  HS    L++   RVPP FS
Sbjct: 226 IARNTLGVAHSKAANLYVKVRRVPPYFS 253


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 394 IGRFQIGSIHSSFLALFISSSRVPPMFS 311
           I R  +G  HS    L++   RVPP FS
Sbjct: 226 IARNTLGVAHSKAANLYVKVRRVPPYFS 253


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 394 IGRFQIGSIHSSFLALFISSSRVPPMFS 311
           I R  +G  HS    L++   RVPP FS
Sbjct: 226 IARNTLGVAHSKAANLYVKVRRVPPYFS 253


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +2

Query: 149 IKTMIFLTSNSRALPEETSKDNTV--LKMPDLD 241
           I +++FL +++ +LPEET    T+  LK  D+D
Sbjct: 328 IASILFLQADTASLPEETDVSGTIDLLKNCDID 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,036,860
Number of Sequences: 27780
Number of extensions: 164837
Number of successful extensions: 341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)