Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00237
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35680.1 68415.m04376 dual specificity protein phosphatase fa...    31   0.36 
At1g14780.1 68414.m01767 expressed protein                             31   0.48 
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    27   5.9  
At3g24580.1 68416.m03088 F-box family protein contains F-box dom...    27   7.8  
At2g27860.1 68415.m03377 expressed protein                             27   7.8  

>At2g35680.1 68415.m04376 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 337

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 34  INKMSYLTRKI-ALIPRVALSRFYNKIVITDDGSTIVALHQDYDFPYEQFKSFTRR 198
           +N  S LT    ALIPR         +V+ DDGS +V  H D +  Y    S +RR
Sbjct: 220 LNTQSCLTDATSALIPRNVKQVCSGNVVVFDDGSMVVVTHSDLE-GYNDDDSRSRR 274


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = -1

Query: 285 FLANSGFIHGALLTSSKSGIFKTVLSLLVSSGKALELLVRK 163
           ++  + ++HG + TS KSGIF + +S+ ++SG     +++K
Sbjct: 512 YVVQNSWVHGPIGTSQKSGIFSS-MSMPLTSGSVHHNMIQK 551


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 312 LNIGGTLELEIKRARKLEWIDPIWN 386
           +N+ GTL  E+++   LE +D +WN
Sbjct: 169 MNLSGTLSPELQKLAHLEILDFMWN 193


>At3g24580.1 68416.m03088 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 309 LLNIGGTLELEIKRARKLEWIDPIWNLPIFIGIDV 413
           L     TLE++I    K+E    +WN  +F+ +D+
Sbjct: 268 LFQCSSTLEMQIWVTTKIEPNAVLWNSKVFLAVDM 302


>At2g27860.1 68415.m03377 expressed protein
          Length = 389

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 209 DNTVLKMPDLDEVKRAP*MKPEFARKQLSNLTLTTEHRWYPRARDKKGQK 358
           D++  ++PD+  + R     P+ +   L   TLT +HR Y  A  K   K
Sbjct: 336 DDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKATSK 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,493,779
Number of Sequences: 28952
Number of extensions: 153948
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)