Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00236
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   0.38 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    24   6.3  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    23   8.3  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    23   8.3  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 272 FDLGLVDLVSYPLPATLSSIQVL 204
           FDL L++ +S+P+P ++++IQ L
Sbjct: 374 FDLDLLNNISFPIPRSINAIQQL 396


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 235 KGYDTRSTSPRSNKF 279
           KGY +RS+SP S K+
Sbjct: 724 KGYRSRSSSPASRKY 738


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 100 IDXVKNRYVQYGIIAWGIG 156
           I+ VKN  ++  I+AW IG
Sbjct: 248 IEAVKNGTIKKPIVAWAIG 266


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 7   FFQLHSTFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRY 123
           F Q H T +   G    + CRG+GG  L    +    RY
Sbjct: 285 FVQFHPTGIYGAGCLITEGCRGEGGYLLNSKGERFMERY 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,407
Number of Sequences: 5004
Number of extensions: 15834
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)