Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00236
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 29 0.58
09_04_0028 - 13928542-13929538,13929736-13929818 26 7.1
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 26 7.1
06_03_1256 + 28787681-28788039,28788430-28788517 26 7.1
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 26 7.1
01_01_0483 - 3550429-3551184 26 7.1
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 25 9.4
08_02_0959 - 23055078-23055177,23055408-23055985 25 9.4
07_03_0015 - 12447947-12448393 25 9.4
02_05_0698 + 31005555-31006763 25 9.4
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 25 9.4
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 24 DVHVRRGGARQGHLQGGRGVAPRVPHRLXEESLCP 128
D H R ++Q + GG G APR P+R+ S P
Sbjct: 78 DPHRRHSLSQQREVGGGIGSAPRSPYRMVHGSASP 112
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 73 DGGSPLVCPIDXVKNRYVQYGIIAWGIGCGEDGTPGV 183
DG +PL+C V + V+YG+ A G G G G+
Sbjct: 154 DGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGL 190
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 54 QGHLQGGRGVAPRVPHRLXEESLCP 128
+GH GGR VA ++PH + + + P
Sbjct: 376 RGHEGGGRSVAHQLPHEVSLDEVHP 400
>06_03_1256 + 28787681-28788039,28788430-28788517
Length = 148
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 22 STFMCAGGEPDKDTCRGDGGSPLVCPIDXVK 114
+ F GG P K+ G GG+P C D K
Sbjct: 77 TAFDAGGGVPCKEKSGGHGGAPSPCSDDDDK 107
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 269 DLGLVDLVSYPLPATLSS 216
D L +L+SYPL ATLSS
Sbjct: 425 DAALSNLLSYPLHATLSS 442
>01_01_0483 - 3550429-3551184
Length = 251
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 9 LPVALDVHVRRGGARQGHLQGGRGVAPRVPH 101
L A+ + GG R G + GG G+AP PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 101 MGHTRGDPPSPLQVSLSGSPPAHMNVECN 15
+ + PP+ LQ L +PP H ++ C+
Sbjct: 28 LSRAKTPPPALLQAILPTAPPKHHSLSCS 56
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 163 EDGTPGVYVDVSXLRTWIDDKV 228
+DGT GV++D TW+ V
Sbjct: 95 DDGTGGVFIDSGTSLTWLQQDV 116
>07_03_0015 - 12447947-12448393
Length = 148
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 39 RGGARQGHLQGGRGVA 86
RGG R+G +GG GVA
Sbjct: 88 RGGGRRGDAEGGDGVA 103
>02_05_0698 + 31005555-31006763
Length = 402
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 22 STFMCAGGEPDKDTCRGDGGSPLVC 96
S + GG D +C +G S LVC
Sbjct: 360 SLALVRGGRDDDGSCSSEGSSALVC 384
>01_06_1416 -
37174913-37175006,37175299-37175441,37175932-37176027,
37177125-37177364,37177456-37177812,37178020-37178097,
37178387-37178434,37179406-37179675,37179954-37180054,
37180452-37180605
Length = 526
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 222 VVDPGPQG*DVHVNSWSAVLSAAYAPGYDAVLDI 121
VVDPG DVH S +A +A Y L+I
Sbjct: 38 VVDPGMIRADVHSKSAAAAATAGYLAARPPTLEI 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,706,643
Number of Sequences: 37544
Number of extensions: 146727
Number of successful extensions: 429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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