Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00236
(315 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 62 8e-11
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 53 5e-08
U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical pr... 35 0.014
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 30 0.30
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 30 0.30
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 30 0.30
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 30 0.30
Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical pr... 29 0.70
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 27 3.8
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 25 8.7
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 25 8.7
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 25 TFMCAGGEPDK-DTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGCGEDGTPGVYVDVSX 201
+ +CAG K D+C+GD G PL+C D + G+++WGIGC G PGVY +V
Sbjct: 223 SMLCAGYSYGKIDSCQGDSGGPLMCARD---GHWELTGVVSWGIGCARPGMPGVYGNVHS 279
Query: 202 LRTWID 219
TWI+
Sbjct: 280 ASTWIN 285
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 52.8 bits (121), Expect = 5e-08
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 34 CAGG-EPDKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGCGEDGTPGVYVDVSXLRT 210
CAG E D+C+GD G P C + +V G+I+WG GC + PG+Y V+ +
Sbjct: 197 CAGYLEGGIDSCQGDSGGPFACRRED--GAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254
Query: 211 WIDDKVAGK 237
WI + G+
Sbjct: 255 WISAIINGQ 263
>U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical
protein F48E3.4 protein.
Length = 279
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 64 CRGDGGSPLVCPIDXVKNRYVQYGIIAWGIG---CGEDGTPGVYVDVSXLRT 210
C D G+PL C +D N+YVQ GI++ G ED + V V+ S ++T
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVSGLYGREMDKEDNSTMVVVNCSEVQT 248
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 STFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRY--VQYGIIAWG 150
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 STFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRY--VQYGIIAWG 150
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 STFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRY--VQYGIIAWG 150
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 STFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRY--VQYGIIAWG 150
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical
protein F19C6.1 protein.
Length = 642
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 52 DKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGC 159
D + +G G+ + VKN YG+ WG+GC
Sbjct: 355 DNEPIKGRVGTVGYMAPEIVKNERYSYGVDWWGVGC 390
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +1
Query: 34 CAGGEPDKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGC 159
C E DK+ C GD G L ++ I+++G C
Sbjct: 260 CTAEEEDKNVCSGDSGGGLTFHQSDSAREFI-IAIVSYGSDC 300
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 86 GDPPSPLQVSLSGSPP 39
G PP+P+ VS +G PP
Sbjct: 121 GGPPAPMPVSRAGGPP 136
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 172 TPGVYVDVSXLRTWIDDKVAGK 237
TPG+ + + + +WIDD++ K
Sbjct: 2145 TPGIVISNNPVESWIDDELEEK 2166
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 172 TPGVYVDVSXLRTWIDDKVAGK 237
TPG+ + + + +WIDD++ K
Sbjct: 2145 TPGIVISNNPVESWIDDELEEK 2166
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 172 TPGVYVDVSXLRTWIDDKVAGK 237
TPG+ + + + +WIDD++ K
Sbjct: 2145 TPGIVISNNPVESWIDDELEEK 2166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,992,421
Number of Sequences: 27780
Number of extensions: 106775
Number of successful extensions: 326
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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