Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00236
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    37   7e-05
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   0.66 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   0.87 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 36.7 bits (81), Expect = 7e-05
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +1

Query: 31  MCAGGEPDKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGCGE 165
           MCA  +  KD C+ D G P++      K R V  GII+WG  CG+
Sbjct: 335 MCAYAK-GKDACQMDSGGPVLWQNPRTK-RLVNIGIISWGAECGK 377


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 89 RGDPPSPLQVSLSGSPP 39
          RG PP+P Q    G PP
Sbjct: 36 RGSPPNPSQGPPPGGPP 52



 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 80  PPSPLQVSLSGSPP 39
           PP P   ++SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +1

Query: 145 WGIGCGEDGTPGVYVDV-SXLRTWIDDKV 228
           W IG G+  TP    +V   LR W    V
Sbjct: 167 WAIGTGKTATPQQAQEVHEKLRNWFSKNV 195


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 80   PPSPLQVSLSGS 45
            PP+PL +S +GS
Sbjct: 1397 PPTPLSISRAGS 1408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,689
Number of Sequences: 438
Number of extensions: 1239
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)