Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00236
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas...    28   1.5  
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p...    27   3.5  
At1g31330.1 68414.m03833 photosystem I reaction center subunit I...    27   3.5  
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote...    26   4.6  
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote...    26   4.6  
At5g37750.1 68418.m04544 DNAJ heat shock N-terminal domain-conta...    26   6.1  
At1g63690.1 68414.m07207 protease-associated (PA) domain-contain...    26   6.1  
At5g57655.2 68418.m07204 xylose isomerase family protein contain...    25   8.1  
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    25   8.1  
At5g04360.1 68418.m00428 pullulanase, putative / starch debranch...    25   8.1  
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha...    25   8.1  

>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
           / asparagine-tRNA ligase 1 (SYNC1) identical to
           SP|Q9SW96
          Length = 572

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 275 LFDLGLVDLVSYPLPATLSSIQVLR 201
           + D+G VD   YPLP T  +++ LR
Sbjct: 131 VIDVGTVDASKYPLPKTKLTLETLR 155


>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
           putative similar to mevalonate diphosphate decarboxylase
           [Arabidopsis thaliana] gi|2288887|emb|CAA74700
          Length = 419

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 133 GIIAWGIGCGEDGTPGVYVDVSXLRTWID 219
           G + W +G  EDG+  V V ++  + W D
Sbjct: 171 GFVKWTMGSKEDGSDSVAVQLADEKHWDD 199


>At1g31330.1 68414.m03833 photosystem I reaction center subunit III
           family protein contains Pfam profile: PF02507:
           photosystem I reaction center subunit III
          Length = 221

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 100 IDXVKNRYVQYGIIAWGIGCGEDGTPGVYVD 192
           I+  K R+  YG   +G+ CG DG P + V+
Sbjct: 113 IEKTKRRFDNYG--KYGLLCGSDGLPHLIVN 141


>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 327

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 45  GARQGHLQGGRGVAPRVPHRLXEESLCP 128
           G R+G + GGRG  PR+ H+   E + P
Sbjct: 214 GNRRGQIHGGRGRGPRI-HQPRRELVPP 240


>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 327

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 45  GARQGHLQGGRGVAPRVPHRLXEESLCP 128
           G R+G + GGRG  PR+ H+   E + P
Sbjct: 214 GNRRGQIHGGRGRGPRI-HQPRRELVPP 240


>At5g37750.1 68418.m04544 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 254

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/92 (23%), Positives = 34/92 (36%)
 Frame = +1

Query: 1   GRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGCGEDGTPG 180
           GR+  +   ++C     + D     G  PL    + VK  Y Q  ++         G  G
Sbjct: 51  GRWNTMIDVYICGSNVGESDWYGVLGVDPL-SDDETVKKHYKQLALLLHPDKNKCYGAEG 109

Query: 181 VYVDVSXLRTWIDDKVAGKGYDTRSTSPRSNK 276
            +  VS     + DKV    YD R  + +  K
Sbjct: 110 AFKLVSEAWCLLSDKVQRSSYDQRRKNSKQGK 141


>At1g63690.1 68414.m07207 protease-associated (PA) domain-containing
           protein contains protease associated (PA) domain,
           Pfam:PF02225
          Length = 540

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +1

Query: 19  HSTFMCAGGEPDKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGCGEDGTPGVYVDVS 198
           H + M      DK    G+ G P++  I  + + +  Y II    G G+   PG+ +  +
Sbjct: 397 HESVMIVVARGDKS---GEDGIPMLLKIPRMFDPWGGYSII----GFGDILLPGLLIAFA 449

Query: 199 XLRTWIDDKVAGKGY 243
               W+ +K    GY
Sbjct: 450 LRYDWLANKTLRTGY 464


>At5g57655.2 68418.m07204 xylose isomerase family protein contains
           similarity to Xylose isomerase (EC 5.3.1.5)
           (Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
          Length = 477

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
 Frame = -1

Query: 243 VSLAGDLVVDPGPQG*DVHVNSWSAVLSAAYAPGYDAV----LDIAILHXVYGAH 91
           +   G L+++P PQ    H   W A  +A +   Y  +    L+I   H     H
Sbjct: 264 IGFKGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGH 318


>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 27  VHVRRGGARQGHL---QGGRGVAPRVPHRL 107
           V +++GG  +G +   +GGRG AP V  RL
Sbjct: 197 VVIQQGGGGRGRVRGGRGGRGPAPTVSRRL 226


>At5g04360.1 68418.m00428 pullulanase, putative / starch debranching
           enzyme, putative similar to pullulanase [Spinacia
           oleracea] GI:634093 (EC 3.2.1.41); contains Pfam
           profiles PF00128: Alpha amylase catalytic domain,
           PF02922: Isoamylase N-terminal domain
          Length = 965

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 121 YVQYGIIAWGIGCGEDGTPGVYVDVSXLRTWIDDKVAGKGYDTR 252
           +V  G+IAW +  GE G+   Y   S   ++ +D +   GYD R
Sbjct: 92  WVTQGVIAWNVDVGE-GSCYFYASKSAGLSFSEDGI--DGYDLR 132


>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1216

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 40  GGEPDKDTCRGDGGSPLVCPIDXVKNRYVQYGIIAWGIGCGEDGTPG 180
           GG  D++   GD G  L   +D ++NR ++  + A   G  E+   G
Sbjct: 828 GGTVDEEDVEGDWGEELDINVDGMENRDIEDILAAAEAGEEENDEEG 874


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,684,998
Number of Sequences: 28952
Number of extensions: 98439
Number of successful extensions: 264
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)