Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00233X
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    84   8e-18
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    84   8e-18
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   0.70 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    24   8.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   8.6  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 83.8 bits (198), Expect = 8e-18
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++EL +KK SDV  FL RV  W+ RQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 24/37 (64%)
 Frame = +1

Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
           G TYGKP   GVN LK  R+ +  AEERVGR C  LR
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLR 114


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 83.8 bits (198), Expect = 8e-18
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++EL +KK SDV  FL RV  W+ RQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 24/37 (64%)
 Frame = +1

Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
           G TYGKP   GVN LK  R+ +  AEERVGR C  LR
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLR 114


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 289 HHGSWACHKWHPSNWTL 239
           H G  +C  W P NWTL
Sbjct: 243 HDGDISCMAWSPINWTL 259


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 176 VFGLCPALWAWERGAYESTD 117
           +F  CP LW W +   E+ D
Sbjct: 68  LFAHCPLLWKWSKVHEEAFD 87


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 175 SSGFVRPCGPGSAVHTSQLTGLPYXHTQQ 89
           S  F+R   P SAV TS   GLP+   Q+
Sbjct: 460 SMDFLRFDPPPSAVKTSHNYGLPFLSNQR 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,719
Number of Sequences: 5004
Number of extensions: 29212
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)