Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00233X
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 83 7e-17
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 81 3e-16
12_02_1111 - 26157796-26160330 32 0.16
05_02_0037 + 5883285-5884292 29 1.5
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 28 2.6
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192... 27 6.1
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 27 6.1
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 27 6.1
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 27 6.1
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 26 8.1
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 83.0 bits (196), Expect = 7e-17
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
MGAY+Y+ EL+R+K SDVMRF+ RV W+ RQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 57
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +1
Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
G YGKPK G+ QLK RN +S+AEER GR+ GGLR
Sbjct: 78 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLR 114
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 81.0 bits (191), Expect = 3e-16
Identities = 36/56 (64%), Positives = 44/56 (78%)
Frame = +2
Query: 29 GAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
GAY+Y+ EL+R+K SDVMRF+ RV W+ RQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 162
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +1
Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
G YGKPK G+ QLK RN +S+AEER GR+ GGLR
Sbjct: 183 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLR 219
>12_02_1111 - 26157796-26160330
Length = 844
Score = 31.9 bits (69), Expect = 0.16
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 207 YSESVCDVVAASVQLLGCHLWQAQDP 284
Y++ VC+V+ +V++ G + W+A+DP
Sbjct: 480 YAQLVCEVILPAVRISGTNSWEARDP 505
>05_02_0037 + 5883285-5884292
Length = 335
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 109 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQ 240
AV ++ AP ++ +A +SP C R CC +P + WWP+
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPR 316
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 110 QSRQLTRMHRAPRPTRPD 163
++ QLTR+H P P RPD
Sbjct: 70 KAHQLTRLHPPPEPPRPD 87
>10_08_0147 +
15218150-15218401,15218569-15218643,15219099-15219208,
15219299-15219560
Length = 232
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 150 PQGRTKPED*ATVLNKVMLYSESVCDVVA 236
P G +P A +V+LY E +C+ VA
Sbjct: 199 PPGLPRPVSKAASSTRVLLYEEELCEAVA 227
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 10 ATGC*DGCLQIYS 48
A GC DGCLQ+Y+
Sbjct: 667 AVGCEDGCLQVYT 679
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 256 GATYGKPKTHGVNQLKPXRN 315
G Y KPK G+ QLK RN
Sbjct: 273 GIVYSKPKHQGITQLKFQRN 292
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 208 YNITLFSTVA*SSGFVRPCGPGSAVHTSQLTGLPYXH 98
Y T++ +A G +RP P + + LT PY H
Sbjct: 260 YQFTVYPFIAKYFGPIRPLRPTAILSVLLLTAYPYMH 296
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 248 LDACGHHVAHGF*IQHNLV*HGSLVFGLCPALWAWERGAYESTDGTAIPSH 96
+D CGHH HG + LV G+ V G + Y +D T+I H
Sbjct: 148 VDGCGHHDCHGRAYRVALV--GTDVAGGATHAAVYSSETYAWSDPTSIDHH 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,005,235
Number of Sequences: 37544
Number of extensions: 228034
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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