Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00233X
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   1e-21
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.67 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 29   0.89 
SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)                 27   6.3  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)               26   8.3  
SB_24835| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 43/57 (75%), Positives = 51/57 (89%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++ELY+KK SD++RFLLRV  WQ RQLT +HRA RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQ 57



 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = +1

Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
           GATYGKP   GVN+LK  R+L+S+AEER GR CGGLR
Sbjct: 78  GATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLR 114


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 115 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASSC*GATYGKPK 279
           P  D+      AH+    P T ++PC    C  QNPC+   P   +   +TYG P+
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQ 291


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
 Frame = +1

Query: 73  RCYAFFVACXGMAV----PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 237
           RCY   VA     +    P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 238 QASSC*GATYGKPKTHGVNQ 297
              +   +T G P+  G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
          Length = 942

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 128 ESTDGTAIPSHATKNA*HRSVFSYTTPEYI 39
           ES+DG  +P   T     R V  + TPE+I
Sbjct: 519 ESSDGEPVPQQRTGARFDREVNEFITPEFI 548


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 265 KWHPSNWTLAATTSHTDSEYNITLFSTVA*SSGFVRPCGPGSAVH 131
           KW  +N +     +     Y+ TL +TV   +G+   C P +A H
Sbjct: 766 KWRLANGSSTNERTFMPDGYSATLTTTVGTPAGYQNDCKPCTAGH 810


>SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)
          Length = 1035

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 71  SVFSYTTPEYICRHPS*QPVAD 6
           SV  +TTPEY C  P  +P  D
Sbjct: 691 SVLMWTTPEYKCPTPCYRPAKD 712


>SB_24835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 318 KVARXLQLVDTMGLGLAISGTLATGRLR 235
           +VA  +Q+V T+G GLA++  + TG +R
Sbjct: 12  RVAALVQIVFTVGKGLALAMIIITGVVR 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,831
Number of Sequences: 59808
Number of extensions: 253287
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)