Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00233X
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    94   2e-20
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 39/57 (68%), Positives = 49/57 (85%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y+QE++RKK SD +R+LLR+  W  RQL+ +HR PRPTRP+KARRLGYRAKQ
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQ 57



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +1

Query: 250 C*GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
           C G TYGKPKTHGVN+LK  ++ Q++AE R GRR G LR
Sbjct: 76  CKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLR 114


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  ELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPR 148
           EL R  + + +   ++   W S  LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  ELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPR 148
           EL R  + + +   ++   W S  LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 289 HHGSWACHKWHPSNWTLAATTSHTDSEYNI 200
           H GS AC+K    N  L A   +TD+E+ +
Sbjct: 28  HLGSTACYKLMHQNTRLFAKRCNTDAEFRL 57


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 151 GPGSAVHTSQLTGLPYXHTQQKTHNIAQF 65
           G G + HTS    LP+ +    +HN + F
Sbjct: 463 GMGGSAHTSSFHQLPFVNHSSSSHNDSSF 491


>Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 VPSVDSYAPRSQAHKAGQSPKTR 180
           +P  D   PRS++H AG  P+++
Sbjct: 92  LPRFDENEPRSRSHSAGTKPRSQ 114


>Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 VPSVDSYAPRSQAHKAGQSPKTR 180
           +P  D   PRS++H AG  P+++
Sbjct: 92  LPRFDENEPRSRSHSAGTKPRSQ 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,773,367
Number of Sequences: 27780
Number of extensions: 178871
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)