Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00233X
(368 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 85 1e-17
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 85 1e-17
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 28 1.7
At3g18050.1 68416.m02296 expressed protein 27 2.9
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ... 27 3.9
At3g60660.1 68416.m06787 expressed protein 26 6.8
At3g53960.1 68416.m05961 proton-dependent oligopeptide transport... 26 6.8
At3g47950.1 68416.m05228 ATPase, plasma membrane-type, putative ... 26 9.0
At2g37900.1 68415.m04652 proton-dependent oligopeptide transport... 26 9.0
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 85.0 bits (201), Expect = 1e-17
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
MGAY+Y+ EL+RKK SDVMRFL RV W+ RQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57
Score = 49.2 bits (112), Expect = 8e-07
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
G YGKP GV QLK R+ +S+AEER GR+ GGLR
Sbjct: 78 GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLR 114
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 85.0 bits (201), Expect = 1e-17
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRVXVWQSRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
MGAY+Y+ EL+RKK SDVMRFL RV W+ RQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57
Score = 49.2 bits (112), Expect = 8e-07
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 256 GATYGKPKTHGVNQLKPXRNLQSIAEERVGRRCGGLR 366
G YGKP GV QLK R+ +S+AEER GR+ GGLR
Sbjct: 78 GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLR 114
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 207 YSESVCDVVAASVQLLGCHLWQAQDP 284
YS+ V +VV +V++ G + W+ +DP
Sbjct: 497 YSQLVSEVVLPAVRIAGINTWEPRDP 522
>At3g18050.1 68416.m02296 expressed protein
Length = 335
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 164 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 45
CP L AW AY +T + S A +N+ S + TTPE
Sbjct: 82 CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120
>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 752
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 207 YSESVCDVVAASVQLLGCHLWQAQDP 284
YS+ V +V+ +V++ G + W+ +DP
Sbjct: 397 YSQLVSEVILPAVRVSGINTWEPRDP 422
>At3g60660.1 68416.m06787 expressed protein
Length = 272
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 153 QGRTKPED*ATVLNKVMLYSESVCDVVAASVQLLGCHLWQ 272
+GR E +N + Y+E+ ++AAS Q L +LW+
Sbjct: 167 RGRLTLEKVNAAINDMASYAEANAHLIAASKQKLAENLWE 206
>At3g53960.1 68416.m05961 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 602
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 91 QKTHNIAQFFPIQLLNISVGTHLSSL 14
+K H IA F I L++I G H SL
Sbjct: 147 RKAHEIAFFIAIYLISIGTGGHKPSL 172
>At3g47950.1 68416.m05228 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H(+)-transporting ATPase from Nicotiana plumbaginifolia
[SP|Q08435, SP|Q08436], Lycopersicon esculentum
[GI:5901757, SP|P22180], Solanum tuberosum [GI:435003];
contains InterPro accession IPR001757: ATPase, E1-E2
type
Length = 960
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 130 TSQLTGLPYXHTQQKTHNIAQFFPIQLLNIS 38
T + T L Y + TH +++ P Q+LN++
Sbjct: 411 TDKRTALTYIDNEGNTHRVSKGAPEQILNLA 441
>At2g37900.1 68415.m04652 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 575
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 91 QKTHNIAQFFPIQLLNISVGTHLSSL 14
+K H +A F I L++I G H SL
Sbjct: 148 RKAHEVAFFIAIYLISIGTGGHKPSL 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,410,966
Number of Sequences: 28952
Number of extensions: 166860
Number of successful extensions: 365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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