Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00232
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 98 4e-21
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 97 1e-20
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 0.56
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 29 1.7
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 5.2
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556... 28 5.2
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 5.2
08_02_0101 + 12374476-12376683 28 5.2
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 5.2
09_02_0084 + 4106803-4106851,4108165-4108460 27 6.9
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 6.9
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 9.1
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 97.9 bits (233), Expect = 4e-21
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = +3
Query: 255 CNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 434
C EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE+ L++++DY+
Sbjct: 76 CAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGLNIVQDYV 135
Query: 435 K 437
K
Sbjct: 136 K 136
Score = 79.8 bits (188), Expect = 1e-15
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +1
Query: 37 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAEN 216
+ VE P P+L G MD+ ALQ V+K + H GLV GL EA KA++K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 217 CDEAAYKKLVQALATNIRFHWSRLTTTKSL 306
CD+ Y KLV+AL H + + K+L
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTL 92
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 96.7 bits (230), Expect = 1e-20
Identities = 39/61 (63%), Positives = 51/61 (83%)
Frame = +3
Query: 255 CNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 434
C EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE+ L++++DY+
Sbjct: 76 CAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYV 135
Query: 435 K 437
K
Sbjct: 136 K 136
Score = 80.2 bits (189), Expect = 9e-16
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +1
Query: 37 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAEN 216
+ VE P P+L G MD+ ALQ V+K + H GLV GL EA KA++K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 217 CDEAAYKKLVQALATNIRFHWSRLTTTKSL 306
CD+ Y KLV+AL H + + K+L
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTL 92
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 31.1 bits (67), Expect = 0.56
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 115 APLAVLHSRPCCYPTRWGWWGPRLQHQP 32
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 108 LQCYIHVHVVTRQDGVGGDLDF 43
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 273 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 404
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1759 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPT 1802
>11_01_0681 -
5568312-5568328,5569057-5569213,5569321-5569482,
5569524-5570546
Length = 452
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/79 (24%), Positives = 29/79 (36%)
Frame = +1
Query: 91 VNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAENCDEAAYKKLVQALATNIR 270
VN Q + + G + G E + +LC A +C + L N
Sbjct: 287 VNYMNQSPVFEGIPSGSFITG-QEVGVVSSGTRCMLCTYAFSCTASTCAFLDHMFTFNFE 345
Query: 271 FHWSRLTTTKSLENGLVSA 327
+W R T L+ L+SA
Sbjct: 346 MYWQRCPTFSKLKTLLISA 364
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 273 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 404
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1755 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDAT 1798
>08_02_0101 + 12374476-12376683
Length = 735
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 91 VNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAENC--DEAAYKKLVQALATN 264
V + L+ L+TA + L+HGL A + + + A++C D Y +V L
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190
Query: 265 IRFHWSRLTTTKSLENG 315
R + + +++ NG
Sbjct: 191 GRTEEAEVLLEEAMSNG 207
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 223 EAAYKKLVQALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSS 384
+ AY+ + AL TN FH LTT K L SA A + +L+++ + S
Sbjct: 505 DTAYEVALVALTTNPSFHELLLTTVKKWPPTLYSASPVISAIEPQLNSSSMTDS 558
>09_02_0084 + 4106803-4106851,4108165-4108460
Length = 114
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 88 DVNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAENCDEAAYKKLVQALA 258
D+ A +L A+ GL +A + DK Q L +N EAA K QALA
Sbjct: 42 DIANAAAPILN-AIFQNGLGSSFDDAVELFDKLQCALDKYYKNIAEAATKWASQALA 97
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 369 SSRQFS-LPCHPCQSCRD 319
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 199 CVLAENCDEAAYKKLVQALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLS 363
C+L+ + D+ Y ++++ + FH SR E G + + R+G++S
Sbjct: 904 CILSLHRDQHCYSRVLELIVNVWAFHSSRRMVYVDPETGAMQEQHLLNGRRGQMS 958
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,159
Number of Sequences: 37544
Number of extensions: 261794
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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